Comparative Genomics

For full details of The protein tree pipeline and the subsequent prediction of homologues, see the Ensembl Compara documentation.

• Overview
• Gene tree coverage and Gene QC for each species
• Size of gene trees (split by their root taxon)
• Gene tree nodes, and the inference of speciation / duplication events

Overall Summary

Legend
Internal nodes (ancestral taxa)	Node types	Speciations	Duplications	Dubious nodes
Leaves (extant species)	Gene tree coverage	Genes in multi-species trees	Genes in single-species trees	Orphaned genes
	Gene QC	Validated genes	Short genes	Long genes	Split genes

Crassostrea gigas

Capitella teleta

Enterobius vermicularis strain Spain/Canary Islands (PRJEB503)

Syphacia muris strain Spain/Valencia (PRJEB524)

Onchocerca ochengi strain Ngaoundere (PRJEB1204)

Onchocerca volvulus strain O. volvulus Cameroon isolate (PRJEB513)

Onchocerca flexuosa strain Red Deer (PRJNA230512)

Dirofilaria immitis (PRJEB1797)

Cercopithifilaria johnstoni (PRJEB47283)

Acanthocheilonema viteae (PRJEB1697)

Litomosoides sigmodontis strain Bain lab strain (PRJEB3075)

Elaeophora elaphi (PRJEB502)

Brugia timori strain Flores island/ Indonesia (PRJEB4663)

Brugia malayi strain FR3 (PRJNA10729)

Brugia pahangi strain Scotland/Glasgow (PRJEB497)

Wuchereria bancrofti strain pt0022 (PRJNA275548)

Loa loa strain CAT (PRJNA246086)

Thelazia callipaeda strain Switzerland/Ticino (PRJEB1205)

Gongylonema pulchrum strain Japan/Hokkaido (PRJEB505)

Dracunculus medinensis (PRJEB500)

Setaria digitata strain RSCHEM2018 (PRJNA479729)

Ascaris suum strain AG01 (PRJNA62057)

Ascaris lumbricoides strain Republic of Ecuador (PRJEB4950)

Parascaris univalens strain PG01 (PRJNA386823)

Parascaris equorum (PRJEB514)

Toxocara canis strain PN_DK_2014 (PRJNA248777)

Anisakis simplex (PRJEB496)

Pristionchus pacificus strain PS312 (PRJNA12644)

Pristionchus exspectatus (PRJEB46690)

Pristionchus arcanus (PRJEB27334)

Pristionchus maxplancki (PRJEB27334)

Pristionchus japonicus (PRJEB27334)

Pristionchus mayeri (PRJEB27334)

Pristionchus entomophagus (PRJEB27334)

Pristionchus fissidentatus (PRJEB27334)

Parapristionchus giblindavisi (PRJEB53331)

Micoletzkya japonica (PRJEB27334)

Oscheius tipulae strain CEW1 (PRJNA644888)

Oscheius tipulae Oscheius_tipulae_assembly_v2 (PRJEB15512)

Diploscapter coronatus strain PDL0010 (PRJDB3143)

Diploscapter pachys strain PF1309 (PRJNA280107)

Caenorhabditis angaria (PRJNA51225)

Caenorhabditis quiockensis strain JU2809 (PRJEB11354)

Caenorhabditis inopinata (PRJDB5687)

Caenorhabditis elegans strain N2 (PRJNA13758)

Caenorhabditis tropicalis (PRJNA53597)

Caenorhabditis brenneri (PRJNA20035)

Caenorhabditis nigoni strain JU1422 (PRJNA384657)

Caenorhabditis briggsae (PRJNA10731)

Caenorhabditis tribulationis strain JU2818 (PRJEB12608)

Caenorhabditis zanzibari strain JU2190 (PRJEB12596)

Caenorhabditis sinica (PRJNA194557)

Caenorhabditis remanei strain PX506 (PRJNA577507)

Caenorhabditis remanei C_remanei-15.0.1 (PRJNA53967)

Caenorhabditis latens (PRJNA248912)

Caenorhabditis panamensis (PRJEB28259)

Caenorhabditis waitukubuli strain NIC564 (PRJEB12602)

Caenorhabditis becei strain QG2083 (PRJEB28243)

Caenorhabditis sulstoni strain JU2788 (PRJEB12601)

Caenorhabditis japonica (PRJNA12591)

Caenorhabditis uteleia strain JU2585 (PRJEB12600)

Caenorhabditis bovis (PRJEB34497)

Caenorhabditis auriculariae strain NKZ352 (PRJEB40642)

Caenorhabditis parvicauda (PRJEB12595)

Mesorhabditis belari (PRJEB30104)

Cylicostephanus goldi strain England/Cheshire (PRJEB498)

Strongylus vulgaris strain USA/Kentucky (PRJEB531)

Oesophagostomum dentatum strain OD-Hann (PRJNA72579)

Necator americanus strain N. amaericanus Hunan isolate (PRJNA72135)

Ancylostoma caninum strain Baltimore (PRJNA72585)

Ancylostoma duodenale strain Baltimore (PRJNA72581)

Ancylostoma ceylanicum strain HY135 (PRJNA231479)

Haemonchus placei strain MHpl1 (PRJEB509)

Haemonchus contortus (PRJEB506)

Teladorsagia circumcincta (PRJNA72569)

Nippostrongylus brasiliensis (PRJEB511)

Heligmosomoides polygyrus (PRJEB15396)

Angiostrongylus vasorum strain ZH-2019-22 (PRJNA663250)

Angiostrongylus costaricensis strain Costa Rica (PRJEB494)

Angiostrongylus cantonensis strain Guangzhou (PRJNA350391)

Dictyocaulus viviparus (PRJNA72587)

Heterorhabditis bacteriophora strain M31e (PRJNA13977)

Steinernema monticolum (PRJNA205067)

Steinernema feltiae strain NW (PRJNA353610)

Steinernema carpocapsae (PRJNA202318)

Steinernema scapterisci (PRJNA204942)

Steinernema glaseri (PRJNA204943)

Panagrolaimus superbus (PRJEB32708)

Panagrolaimus sp. ES5 (PRJEB32708)

Panagrolaimus davidi (PRJEB32708)

Panagrolaimus sp. PS1159 (PRJEB32708)

Panagrolaimus sp. JU765 (PRJEB32708)

Panagrellus redivivus (PRJNA186477)

Halicephalobus sp. NKZ332 (PRJNA555616)

Halicephalobus mephisto (PRJNA528747)

Acrobeloides nanus (PRJEB26554)

Aphelenchoides fujianensis strain Dali (PRJNA834627)

Aphelenchoides besseyi strain APVT (PRJNA834627)

Aphelenchoides bicaudatus strain Fsh (PRJNA834627)

Bursaphelenchus xylophilus strain Ka4C1 (PRJEB40022)

Bursaphelenchus xylophilus ASM23113v1_submitted (PRJEA64437)

Bursaphelenchus okinawaensis strain SH1 (PRJEB40023)

Heterodera glycines strain TN10 (PRJNA381081)

Heterodera schachtii strain Bonn (PRJNA722882)

Globodera pallida strain D383 (PRJNA764088)

Globodera pallida strain Lindley (PRJEB123)

Globodera rostochiensis strain Ro1 (PRJEB13504)

Meloidogyne floridensis strain SJF1 (PRJNA340324)

Meloidogyne incognita (PRJEB8714)

Meloidogyne arenaria strain A2-O Okinawa_01 (PRJNA438575)

Meloidogyne javanica strain VW4 (PRJNA340324)

Meloidogyne enterolobii strain L30 (PRJNA340324)

Meloidogyne hapla strain VW9 (PRJNA29083)

Meloidogyne graminicola (PRJNA411966)

Meloidogyne chitwoodi strain Race1 (PRJNA666745)

Ditylenchus dipsaci strain pooled J2 (PRJNA498219)

Ditylenchus destructor strain Dd01 (PRJNA312427)

Strongyloides ratti (PRJEB125)

Strongyloides stercoralis strain PV0001 (PRJEB528)

Strongyloides papillosus strain LIN (PRJEB525)

Strongyloides venezuelensis (PRJEB530)

Parastrongyloides trichosuri strain KNP (PRJEB515)

Rhabditophanes sp. KR3021 strain kr 3021 (PRJEB1297)

Plectus sambesii strain ES601 (PRJNA390260)

Trichuris trichiura strain Republic of Ecuador (PRJEB535)

Trichuris suis (PRJNA179528)

Trichuris muris (PRJEB126)

Trichinella papuae strain ISS1980 (PRJNA257433)

Trichinella zimbabwensis strain ISS1029 (PRJNA257433)

Trichinella pseudospiralis strain ISS13 (PRJNA257433)

Trichinella spiralis strain ISS 195 (PRJNA12603)

Trichinella nelsoni strain ISS37 (PRJNA257433)

Trichinella britovi strain ISS120 (PRJNA257433)

Trichinella sp. T8 strain ISS272 (PRJNA257433)

Trichinella murrelli strain ISS417 (PRJNA257433)

Trichinella sp. T9 strain ISS409 (PRJNA257433)

Trichinella nativa strain ISS10 (PRJNA257433)

Trichinella sp. T6 strain ISS34 (PRJNA257433)

Trichinella patagoniensis strain ISS2496 (PRJNA257433)

Soboliphyme baturini strain Alaska/Dall Island (PRJEB516)

Romanomermis culicivorax (PRJEB1358)

Schmidtea mediterranea strain S2F19 (PRJNA885486)

Macrostomum lignano strain DV1 (PRJNA371498)

Opisthorchis viverrini (PRJNA222628)

Opisthorchis felineus strain AK-0245 (PRJNA413383)

Clonorchis sinensis strain Cs-k2 (PRJNA386618)

Paragonimus westermani (PRJNA454344)

Atriophallophorus winterbourni strain NZ2018 (PRJNA636673)

Fasciola hepatica Fasciola_10x_pilon (PRJEB25283)

Fasciola hepatica F_hepatica_1.0.allpaths.pg (PRJNA179522)

Fasciola gigantica strain Uganda_cow_1 (PRJNA230515)

Echinostoma caproni strain Egypt (PRJEB1207)

Fasciolopsis buski strain HT (PRJNA284521)

Dicrocoelium dendriticum strain tdDicDend1.1 (PRJEB44434)

Schistosoma rodhaini strain tdSchRodh1.1 (PRJEB44434)

Schistosoma mansoni (PRJEA36577)

Schistosoma margrebowiei strain tdSchMarg1.1 (PRJEB44434)

Schistosoma spindale strain tdSchSpin1.1 (PRJEB44434)

Schistosoma bovis strain tdSchBovi1.1 (PRJEB44434)

Schistosoma curassoni strain tdSchCurr1.1 (PRJEB44434)

Schistosoma guineensis strain tdSchGuin1.1 (PRJEB44434)

Schistosoma haematobium (PRJNA78265)

Schistosoma intercalatum strain tdSchInte1.1 (PRJEB44434)

Schistosoma mattheei strain tdSchMatt1.1 (PRJEB44434)

Schistosoma turkestanicum strain tdSchTurk1.1 (PRJEB44434)

Schistosoma japonicum strain HuSjv2 (PRJNA520774)

Trichobilharzia regenti strain tdTriRege1.1 (PRJEB44434)

Trichobilharzia szidati strain tdTriSzid1.1 (PRJEB44434)

Heterobilharzia americana strain tdHetHame1.1 (PRJEB44434)

Gyrodactylus salaris strain Lier (PRJNA244375)

Gyrodactylus bullatarudis strain Rox2016 (PRJNA532341)

Protopolystoma xenopodis (PRJEB1201)

Taenia asiatica strain TASYD01 (PRJNA299871)

Taenia saginata strain TSAYD01 (PRJNA71493)

Taenia multiceps strain Gns01 (PRJNA307624)

Taenia solium strain Mexico (PRJNA170813)

Hydatigera taeniaeformis strain Spain/Canary Islands (PRJEB534)

Echinococcus granulosus strain G1 (PRJNA182977)

Echinococcus granulosus strain G1 (PRJEB121)

Echinococcus multilocularis strain Java (PRJEB122)

Echinococcus canadensis (PRJEB8992)

Echinococcus oligarthrus strain DaMi1 (PRJEB31222)

Hymenolepis microstoma (PRJEB124)

Rodentolepis nana strain Japan (PRJEB508)

Hymenolepis diminuta strain laboratory inbred isolate (PRJEB30942)

Mesocestoides corti strain Specht & Voge 1965 (PRJEB510)

Spirometra erinaceieuropaei (PRJEB1202)

Schistocephalus solidus strain NST_G2 (PRJEB527)

Dibothriocephalus latus (PRJEB1206)

Drosophila melanogaster

Ixodes scapularis strain Wikel

Mus musculus reference (CL57BL6) strain

Rattus norvegicus strain BN/NHsdMcwi

Homo sapiens

Danio rerio

Ciona intestinalis

Trichoplax adhaerens strain Grell-BS-1999

Nematostella vectensis strain CH2 x CH6

Amphimedon queenslandica

Saccharomyces cerevisiae S288C

Schizosaccharomyces pombe 972h-