WormBase ParaSite HomeVersion: WBPS18 (WS285)

Comparative Genomics

For full details of The protein tree pipeline and the subsequent prediction of homologues, see the Ensembl Compara documentation.

This page provides a summary of the Ensembl phylogenetic analysis of protein families. The following views are available:

Overall Summary

Legend
Internal nodes (ancestral taxa) Node types Speciations Duplications Dubious nodes
Leaves (extant species) Gene tree coverage Genes in multi-species trees Genes in single-species trees Orphaned genes
Gene QC Validated genes Short genes Long genes Split genes
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-
Nematostella vectensis strain CH2 x CH6
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Trichoplax adhaerens strain Grell-BS-1999
-----------------------------------------------------------------------------------------------
-
Capitella teleta
----------
Crassostrea gigas
----------------------------------------------------------
-
Macrostomum lignano strain DV1 (PRJNA371498)
-------------
Schmidtea mediterranea strain S2F19 (PRJNA885486)
-------------
-
Opisthorchis felineus strain AK-0245 (PRJNA413383)
-------------
----
Opisthorchis viverrini (PRJNA222628)
-------------
--------
Clonorchis sinensis strain Cs-k2 (PRJNA386618)
-------------
------------
Paragonimus westermani (PRJNA454344)
----------------------------
Atriophallophorus winterbourni strain NZ2018 (PRJNA636673)
---------------------------------
----
-
Fasciola hepatica F_hepatica_1.0.allpaths.pg (PRJNA179522)
-------------------
----
Fasciola hepatica Fasciola_10x_pilon (PRJEB25283)
-------------------
--------
Fasciola gigantica strain Uganda_cow_1 (PRJNA230515)
----------------
------------
Fasciolopsis buski strain HT (PRJNA284521)
---------------------------
Echinostoma caproni strain Egypt (PRJEB1207)
----------------------------
Dicrocoelium dendriticum strain tdDicDend1.1 (PRJEB44434)
------------------------------------
-
Schistosoma mansoni (PRJEA36577)
-------------------
Schistosoma rodhaini strain tdSchRodh1.1 (PRJEB44434)
-------------
----
--------------------
-
Schistosoma spindale strain tdSchSpin1.1 (PRJEB44434)
--------------------------------------
-------------------
Schistosoma margrebowiei strain tdSchMarg1.1 (PRJEB44434)
-------------------------------
-
Schistosoma curassoni strain tdSchCurr1.1 (PRJEB44434)
-------------------------
----
----
Schistosoma bovis strain tdSchBovi1.1 (PRJEB44434)
----------------------
-------
--------
Schistosoma guineensis strain tdSchGuin1.1 (PRJEB44434)
-------------------------------
------------
Schistosoma haematobium (PRJNA78265)
----------------------
-------
----------------
Schistosoma intercalatum strain tdSchInte1.1 (PRJEB44434)
----------------
--------------------------------
Schistosoma mattheei strain tdSchMatt1.1 (PRJEB44434)
----------------------
-----------------------------------
Schistosoma turkestanicum strain tdSchTurk1.1 (PRJEB44434)
---------------------------------------------------------
Schistosoma japonicum strain HuSjv2 (PRJNA520774)
-------------------------
-
Trichobilharzia szidati strain tdTriSzid1.1 (PRJEB44434)
--------------------------------------------------
----
Trichobilharzia regenti strain tdTriRege1.1 (PRJEB44434)
--------------------------
Heterobilharzia americana strain tdHetHame1.1 (PRJEB44434)
----------------------
-
Gyrodactylus bullatarudis strain Rox2016 (PRJNA532341)
-------------------------------------------------------
----
Gyrodactylus salaris strain Lier (PRJNA244375)
-----------------------
Protopolystoma xenopodis (PRJEB1201)
-------------------
-
Rodentolepis nana strain Japan (PRJEB508)
-------------
----------------
----
Hymenolepis microstoma (PRJEB124)
-----------------------
Hymenolepis diminuta strain laboratory inbred isolate (PRJEB30942)
-------------------
-
Taenia saginata strain TSAYD01 (PRJNA71493)
----------------
----
----
Taenia asiatica strain TASYD01 (PRJNA299871)
----------------------
--------
Taenia multiceps strain Gns01 (PRJNA307624)
----------------------
------------
Taenia solium strain Mexico (PRJNA170813)
-------------------------------------
Hydatigera taeniaeformis strain Spain/Canary Islands (PRJEB534)
----------------
----
----
-
Echinococcus granulosus strain G1 (PRJEB121)
-------------------------
----
Echinococcus granulosus strain G1 (PRJNA182977)
-------------------------
--------
Echinococcus multilocularis strain Java (PRJEB122)
-----------------------------
-------
------------
Echinococcus canadensis (PRJEB8992)
-------------------------------
Echinococcus oligarthrus strain DaMi1 (PRJEB31222)
----------------------------------------
Mesocestoides corti strain Specht & Voge 1965 (PRJEB510)
----------------
-
Spirometra erinaceieuropaei (PRJEB1202)
---------------------------------
----
Schistocephalus solidus strain NST_G2 (PRJEB527)
-----------------
Dibothriocephalus latus (PRJEB1206)
-------------------------
-
Trichinella nelsoni strain ISS37 (PRJNA257433)
----------------
Trichinella spiralis strain ISS 195 (PRJNA12603)
-------------
--------
-
Trichinella nativa strain ISS10 (PRJNA257433)
-------------------
----
Trichinella sp. T6 strain ISS34 (PRJNA257433)
-------------------------
-
Trichinella murrelli strain ISS417 (PRJNA257433)
----------------
----
----
Trichinella sp. T9 strain ISS409 (PRJNA257433)
-------------
-------
-
Trichinella sp. T8 strain ISS272 (PRJNA257433)
----------------------
Trichinella britovi strain ISS120 (PRJNA257433)
-------------------------------
Trichinella patagoniensis strain ISS2496 (PRJNA257433)
-------------
-------
-
Trichinella zimbabwensis strain ISS1029 (PRJNA257433)
-------------------------------
----
Trichinella papuae strain ISS1980 (PRJNA257433)
----------
--------------
Trichinella pseudospiralis strain ISS13 (PRJNA257433)
-------
----------
-------
-
Trichuris trichiura strain Republic of Ecuador (PRJEB535)
----
--------------------------------------
----
Trichuris suis (PRJNA179528)
------------------------------------------------------------------
-----------
Trichuris muris (PRJEB126)
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Soboliphyme baturini strain Alaska/Dall Island (PRJEB516)
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Romanomermis culicivorax (PRJEB1358)
-----------------------------------------------------------------
-
Syphacia muris strain Spain/Valencia (PRJEB524)
----------------------------
Enterobius vermicularis strain Spain/Canary Islands (PRJEB503)
----------------------------
-
Ascaris suum strain AG01 (PRJNA62057)
----------------------------
----
Ascaris lumbricoides strain Republic of Ecuador (PRJEB4950)
----------------------------
----
-
Parascaris univalens strain PG01 (PRJNA386823)
----------------------------------------------------
-------
Parascaris equorum (PRJEB514)
-------------------------------------------------
------------------
Toxocara canis strain PN_DK_2014 (PRJNA248777)
----------------------------------------------
Anisakis simplex (PRJEB496)
----------------------------------
-
Onchocerca volvulus strain O. volvulus Cameroon isolate (PRJEB513)
----------------------------------
----
Onchocerca ochengi strain Ngaoundere (PRJEB1204)
------------------------------------------
--------
Onchocerca flexuosa strain Red Deer (PRJNA230512)
---------------------------------------------
Dirofilaria immitis (PRJEB1797)
-------------------------------------
-
Brugia timori strain Flores island/ Indonesia (PRJEB4663)
----------------------------
----
----
----
Brugia malayi strain FR3 (PRJNA10729)
-------------------------------------
--------
Brugia pahangi strain Scotland/Glasgow (PRJEB497)
-------------------------------------
------------
Wuchereria bancrofti strain pt0022 (PRJNA275548)
----------------------------------------------------
Loa loa strain CAT (PRJNA246086)
-------------------------------
----
----
-
Acanthocheilonema viteae (PRJEB1697)
----------------------------------------
----
Cercopithifilaria johnstoni (PRJEB47283)
-------------------------------
-----------
--------
Litomosoides sigmodontis strain Bain lab strain (PRJEB3075)
------------------------------------------------
Elaeophora elaphi (PRJEB502)
-------------------------------
-------------------------------
Thelazia callipaeda strain Switzerland/Ticino (PRJEB1205)
----------------------------
-----------------------------------
Gongylonema pulchrum strain Japan/Hokkaido (PRJEB505)
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Dracunculus medinensis (PRJEB500)
----------------------------------------------------------------
Setaria digitata strain RSCHEM2018 (PRJNA479729)
----------------------------
-
Steinernema scapterisci (PRJNA204942)
----------------------------
----
Steinernema carpocapsae (PRJNA202318)
------------------------------------------------------------
----
-
Steinernema feltiae strain NW (PRJNA353610)
----------------------------------
Steinernema monticolum (PRJNA205067)
---------------------------------------
Steinernema glaseri (PRJNA204943)
-------------------------------
-
Meloidogyne floridensis strain SJF1 (PRJNA340324)
-------------------------------
----
Meloidogyne incognita (PRJEB8714)
-------------------------------
----
-
Meloidogyne arenaria strain A2-O Okinawa_01 (PRJNA438575)
-------------------------------
-------
Meloidogyne javanica strain VW4 (PRJNA340324)
-------------------------------
---------------
Meloidogyne enterolobii strain L30 (PRJNA340324)
-------------------------------
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Meloidogyne hapla strain VW9 (PRJNA29083)
-----------------------------------------------------
Meloidogyne graminicola (PRJNA411966)
-------------------------------
------------------------
Meloidogyne chitwoodi strain Race1 (PRJNA666745)
-------------------
----------------
-
Globodera pallida strain D383 (PRJNA764088)
----------------------------------
----
Globodera pallida strain Lindley (PRJEB123)
----------------------
-------
----------------
--------
Globodera rostochiensis strain Ro1 (PRJEB13504)
------------------------------------------------
--------------
-
Heterodera glycines strain TN10 (PRJNA381081)
----------------------------------------
Heterodera schachtii strain Bonn (PRJNA722882)
----------------------------------
----------------------------
-
Ditylenchus dipsaci strain pooled J2 (PRJNA498219)
----------------------------------------
Ditylenchus destructor strain Dd01 (PRJNA312427)
----------------------------------------
-
Bursaphelenchus xylophilus ASM23113v1_submitted (PRJEA64437)
----------------------------------------
----
Bursaphelenchus xylophilus strain Ka4C1 (PRJEB40022)
---------------------------------------------------------
--------
Bursaphelenchus okinawaensis strain SH1 (PRJEB40023)
----------------------------------------
-
Aphelenchoides fujianensis strain Dali (PRJNA834627)
-------------------------------------
----
Aphelenchoides besseyi strain APVT (PRJNA834627)
----------------------------------
--------
Aphelenchoides bicaudatus strain Fsh (PRJNA834627)
----------------------------------------
-
Panagrolaimus superbus (PRJEB32708)
----------------------------------------
----
Panagrolaimus sp. ES5 (PRJEB32708)
----------------------------------------
----
-
Panagrolaimus sp. PS1159 (PRJEB32708)
----------------------------------------------
Panagrolaimus davidi (PRJEB32708)
----------------------------------------
------------
Panagrolaimus sp. JU765 (PRJEB32708)
-------------------------------
-------------
Halicephalobus mephisto (PRJNA528747)
--------------------------------------------------
------------
-
Halicephalobus sp. NKZ332 (PRJNA555616)
-------------
----------------------
Panagrellus redivivus (PRJNA186477)
-----------------------------------------------
Acrobeloides nanus (PRJEB26554)
-------------------------------
-
Strongyloides ratti (PRJEB125)
-------
----------------------
----
Strongyloides stercoralis strain PV0001 (PRJEB528)
----
-------------------------
----
-
Strongyloides papillosus strain LIN (PRJEB525)
----------------------------------------------------
-------
Strongyloides venezuelensis (PRJEB530)
---------------------------------------
Parastrongyloides trichosuri strain KNP (PRJEB515)
----------------------------------------
Rhabditophanes sp. KR3021 strain kr 3021 (PRJEB1297)
--------------------------------------------------------
-
Caenorhabditis angaria (PRJNA51225)
-------------------------------
Caenorhabditis quiockensis strain JU2809 (PRJEB11354)
-----------------------------------------------
-
Caenorhabditis elegans strain N2 (PRJNA13758)
----------------------------------
Caenorhabditis inopinata (PRJDB5687)
----------------------------------
-
Caenorhabditis zanzibari strain JU2190 (PRJEB12596)
----------------------------------
----
Caenorhabditis tribulationis strain JU2818 (PRJEB12608)
-------------------------------
----
--------
Caenorhabditis sinica (PRJNA194557)
----------------------------
-----------------
-
Caenorhabditis briggsae (PRJNA10731)
----------------------
----------------
----
Caenorhabditis nigoni strain JU1422 (PRJNA384657)
-------------------------------------------
-
Caenorhabditis remanei C_remanei-15.0.1 (PRJNA53967)
----------------------------------
--------
----
Caenorhabditis remanei strain PX506 (PRJNA577507)
-------------------------------
-----------
Caenorhabditis latens (PRJNA248912)
-------------------------------------------------
-
Caenorhabditis tropicalis (PRJNA53597)
-------------------------
-------------
Caenorhabditis brenneri (PRJNA20035)
----------------
----------------------
-
Caenorhabditis panamensis (PRJEB28259)
----------------------------
-------
----
Caenorhabditis waitukubuli strain NIC564 (PRJEB12602)
----------------------------------
--------
Caenorhabditis becei strain QG2083 (PRJEB28243)
----------------------
------------------
------------
Caenorhabditis sulstoni strain JU2788 (PRJEB12601)
----------------------------------------------
Caenorhabditis japonica (PRJNA12591)
----------------------
--------------------------------------
Caenorhabditis uteleia strain JU2585 (PRJEB12600)
-------------------------------------------------------------------
Caenorhabditis bovis (PRJEB34497)
----------------------
-----------------------------------------------
Caenorhabditis auriculariae strain NKZ352 (PRJEB40642)
------------------------------------------------------------------------
Caenorhabditis parvicauda (PRJEB12595)
----------------------
------------------------------------------------
-
Diploscapter pachys strain PF1309 (PRJNA280107)
----------------------------
Diploscapter coronatus strain PDL0010 (PRJDB3143)
----------------------
----------------------------------------------------
-
Oscheius tipulae Oscheius_tipulae_assembly_v2 (PRJEB15512)
----------------------------
Oscheius tipulae strain CEW1 (PRJNA644888)
---------------------------------------------------------------------------------
Mesorhabditis belari (PRJEB30104)
-------------------------
-
Ancylostoma duodenale strain Baltimore (PRJNA72581)
-----------------------------
----
Ancylostoma caninum strain Baltimore (PRJNA72585)
-
-----------------------------
Ancylostoma ceylanicum strain HY135 (PRJNA231479)
-------------------------
----
-
Cylicostephanus goldi strain England/Cheshire (PRJEB498)
----------------------
----------
----
Strongylus vulgaris strain USA/Kentucky (PRJEB531)
----------------------------
----
--------
Oesophagostomum dentatum strain OD-Hann (PRJNA72579)
------------------------------------------
Necator americanus strain N. amaericanus Hunan isolate (PRJNA72135)
--------------------------------------
-
Heligmosomoides polygyrus (PRJEB15396)
-----------------------------------
----
Nippostrongylus brasiliensis (PRJEB511)
----------------------------
-------
-
Haemonchus placei strain MHpl1 (PRJEB509)
----------------------------------
----
Haemonchus contortus (PRJEB506)
--------------------------------------
Teladorsagia circumcincta (PRJNA72569)
---------------------------------------------------------
-------
-
Angiostrongylus vasorum strain ZH-2019-22 (PRJNA663250)
-------------------------------
----
Angiostrongylus costaricensis strain Costa Rica (PRJEB494)
-------------------
---------------
--------
Angiostrongylus cantonensis strain Guangzhou (PRJNA350391)
---------------------------------
Dictyocaulus viviparus (PRJNA72587)
----------------------------------------------
Heterorhabditis bacteriophora strain M31e (PRJNA13977)
----------------------
-
Pristionchus pacificus strain PS312 (PRJNA12644)
----------------------
----
Pristionchus exspectatus (PRJEB46690)
----------------------
--------
Pristionchus arcanus (PRJEB27334)
----------------------
------------
Pristionchus maxplancki (PRJEB27334)
----------------------
----------------
Pristionchus japonicus (PRJEB27334)
----------------------
--------------------
Pristionchus mayeri (PRJEB27334)
----------------------
------------------------
Pristionchus entomophagus (PRJEB27334)
----------------------
----------------------------
Pristionchus fissidentatus (PRJEB27334)
-----------------------------------------------
--------------------------------
Parapristionchus giblindavisi (PRJEB53331)
---------------------------------------------------
Micoletzkya japonica (PRJEB27334)
--------------------------------------------------------------------------------------------
Plectus sambesii strain ES601 (PRJNA390260)
-------------------------------------------------------------------------------------------------
-
Drosophila melanogaster
-------------
Ixodes scapularis strain Wikel
-------------
-
Mus musculus reference (CL57BL6) strain
-------------
----
Rattus norvegicus strain BN/NHsdMcwi
-------------
--------
Homo sapiens
------------------------------------------------------------------------------------------
------------
Danio rerio
----------------------
Ciona intestinalis
---------------------------------------------------------------------------------------------------------------
Amphimedon queenslandica
------------------------------------------------------------------------------------------------------------
-
Schizosaccharomyces pombe 972h-
----
Saccharomyces cerevisiae S288C