Comparative Genomics

For full details of The protein tree pipeline and the subsequent prediction of homologues, see the Ensembl Compara documentation.

• Overview
• Gene tree coverage and Gene QC for each species
• Size of gene trees (split by their root taxon)
• Gene tree nodes, and the inference of speciation / duplication events

Overall Summary

Legend
Internal nodes (ancestral taxa)	Node types	Speciations	Duplications	Dubious nodes
Leaves (extant species)	Gene tree coverage	Genes in multi-species trees	Genes in single-species trees	Orphaned genes
	Gene QC	Validated genes	Short genes	Long genes	Split genes

Ixodes scapularis strain Wikel

Drosophila melanogaster

Syphacia muris strain Spain/Valencia (PRJEB524)

Enterobius vermicularis strain Spain/Canary Islands (PRJEB503)

Ascaris lumbricoides strain Republic of Ecuador (PRJEB4950)

Ascaris suum strain AG01 (PRJNA62057)

Parascaris univalens strain PG01 (PRJNA386823)

Parascaris equorum (PRJEB514)

Toxocara canis strain PN_DK_2014 (PRJNA248777)

Anisakis simplex (PRJEB496)

Cercopithifilaria johnstoni (PRJEB47283)

Acanthocheilonema viteae (PRJEB1697)

Litomosoides sigmodontis strain Bain lab strain (PRJEB3075)

Elaeophora elaphi (PRJEB502)

Brugia timori strain Flores island/ Indonesia (PRJEB4663)

Brugia malayi strain FR3 (PRJNA10729)

Brugia pahangi strain Scotland/Glasgow (PRJEB497)

Wuchereria bancrofti strain pt0022 (PRJNA275548)

Loa loa strain CAT (PRJNA246086)

Onchocerca volvulus strain O. volvulus Cameroon isolate (PRJEB513)

Onchocerca ochengi strain Ngaoundere (PRJEB1204)

Onchocerca flexuosa strain Red Deer (PRJNA230512)

Dirofilaria immitis (PRJEB1797)

Thelazia callipaeda strain Switzerland/Ticino (PRJEB1205)

Gongylonema pulchrum strain Japan/Hokkaido (PRJEB505)

Dracunculus medinensis (PRJEB500)

Setaria digitata strain RSCHEM2018 (PRJNA479729)

Strongyloides papillosus strain LIN (PRJEB525)

Strongyloides venezuelensis (PRJEB530)

Strongyloides stercoralis strain PV0001 (PRJEB528)

Strongyloides ratti (PRJEB125)

Parastrongyloides trichosuri strain KNP (PRJEB515)

Rhabditophanes sp. KR3021 strain kr 3021 (PRJEB1297)

Ditylenchus dipsaci strain pooled J2 (PRJNA498219)

Ditylenchus destructor strain Dd01 (PRJNA312427)

Meloidogyne arenaria strain A2-O Okinawa_01 (PRJNA438575)

Meloidogyne javanica strain VW4 (PRJNA340324)

Meloidogyne floridensis strain SJF1 (PRJNA340324)

Meloidogyne incognita (PRJEB8714)

Meloidogyne enterolobii strain L30 (PRJNA340324)

Meloidogyne hapla strain VW9 (PRJNA29083)

Meloidogyne graminicola (PRJNA411966)

Meloidogyne chitwoodi strain Race1 (PRJNA666745)

Globodera pallida strain Lindley (PRJEB123)

Globodera pallida strain D383 (PRJNA764088)

Globodera rostochiensis strain Ro1 (PRJEB13504)

Heterodera schachtii strain Bonn (PRJNA722882)

Heterodera glycines strain TN10 (PRJNA381081)

Aphelenchoides besseyi strain APVT (PRJNA834627)

Aphelenchoides fujianensis strain Dali (PRJNA834627)

Aphelenchoides bicaudatus strain Fsh (PRJNA834627)

Bursaphelenchus xylophilus strain Ka4C1 (PRJEB40022)

Bursaphelenchus xylophilus ASM23113v1_submitted (PRJEA64437)

Bursaphelenchus okinawaensis strain SH1 (PRJEB40023)

Panagrolaimus davidi (PRJEB32708)

Panagrolaimus sp. PS1159 (PRJEB32708)

Panagrolaimus superbus (PRJEB32708)

Panagrolaimus sp. ES5 (PRJEB32708)

Panagrolaimus sp. JU765 (PRJEB32708)

Halicephalobus sp. NKZ332 (PRJNA555616)

Halicephalobus mephisto (PRJNA528747)

Panagrellus redivivus (PRJNA186477)

Acrobeloides nanus (PRJEB26554)

Steinernema scapterisci (PRJNA204942)

Steinernema carpocapsae (PRJNA202318)

Steinernema feltiae strain NW (PRJNA353610)

Steinernema monticolum (PRJNA205067)

Steinernema glaseri (PRJNA204943)

Pristionchus pacificus strain PS312 (PRJNA12644)

Pristionchus exspectatus (PRJEB46690)

Pristionchus arcanus (PRJEB27334)

Pristionchus maxplancki (PRJEB27334)

Pristionchus japonicus (PRJEB27334)

Pristionchus mayeri (PRJEB27334)

Pristionchus entomophagus (PRJEB27334)

Pristionchus fissidentatus (PRJEB27334)

Parapristionchus giblindavisi (PRJEB53331)

Micoletzkya japonica (PRJEB27334)

Angiostrongylus vasorum strain ZH-2019-22 (PRJNA663250)

Angiostrongylus costaricensis strain Costa Rica (PRJEB494)

Angiostrongylus cantonensis strain Guangzhou (PRJNA350391)

Dictyocaulus viviparus (PRJNA72587)

Ancylostoma duodenale strain Baltimore (PRJNA72581)

Ancylostoma caninum strain Baltimore (PRJNA72585)

Ancylostoma ceylanicum strain HY135 (PRJNA231479)

Strongylus vulgaris strain USA/Kentucky (PRJEB531)

Cylicostephanus goldi strain England/Cheshire (PRJEB498)

Oesophagostomum dentatum strain OD-Hann (PRJNA72579)

Necator americanus strain N. amaericanus Hunan isolate (PRJNA72135)

Heligmosomoides polygyrus (PRJEB15396)

Nippostrongylus brasiliensis (PRJEB511)

Haemonchus placei strain MHpl1 (PRJEB509)

Haemonchus contortus (PRJEB506)

Teladorsagia circumcincta (PRJNA72569)

Heterorhabditis bacteriophora strain M31e (PRJNA13977)

Diploscapter pachys strain PF1309 (PRJNA280107)

Diploscapter coronatus strain PDL0010 (PRJDB3143)

Caenorhabditis angaria (PRJNA51225)

Caenorhabditis quiockensis strain JU2809 (PRJEB11354)

Caenorhabditis panamensis (PRJEB28259)

Caenorhabditis waitukubuli strain NIC564 (PRJEB12602)

Caenorhabditis becei strain QG2083 (PRJEB28243)

Caenorhabditis sulstoni strain JU2788 (PRJEB12601)

Caenorhabditis japonica (PRJNA12591)

Caenorhabditis remanei strain PX506 (PRJNA577507)

Caenorhabditis remanei C_remanei-15.0.1 (PRJNA53967)

Caenorhabditis latens (PRJNA248912)

Caenorhabditis zanzibari strain JU2190 (PRJEB12596)

Caenorhabditis tribulationis strain JU2818 (PRJEB12608)

Caenorhabditis sinica (PRJNA194557)

Caenorhabditis nigoni strain JU1422 (PRJNA384657)

Caenorhabditis briggsae (PRJNA10731)

Caenorhabditis tropicalis (PRJNA53597)

Caenorhabditis brenneri (PRJNA20035)

Caenorhabditis elegans strain N2 (PRJNA13758)

Caenorhabditis inopinata (PRJDB5687)

Caenorhabditis uteleia strain JU2585 (PRJEB12600)

Caenorhabditis bovis (PRJEB34497)

Caenorhabditis auriculariae strain NKZ352 (PRJEB40642)

Caenorhabditis parvicauda (PRJEB12595)

Oscheius tipulae strain CEW1 (PRJNA644888)

Oscheius tipulae Oscheius_tipulae_assembly_v2 (PRJEB15512)

Mesorhabditis belari (PRJEB30104)

Plectus sambesii strain ES601 (PRJNA390260)

Trichuris suis (PRJNA179528)

Trichuris trichiura strain Republic of Ecuador (PRJEB535)

Trichuris muris (PRJEB126)

Trichinella papuae strain ISS1980 (PRJNA257433)

Trichinella zimbabwensis strain ISS1029 (PRJNA257433)

Trichinella pseudospiralis strain ISS13 (PRJNA257433)

Trichinella spiralis strain ISS 195 (PRJNA12603)

Trichinella nelsoni strain ISS37 (PRJNA257433)

Trichinella nativa strain ISS10 (PRJNA257433)

Trichinella sp. T6 strain ISS34 (PRJNA257433)

Trichinella murrelli strain ISS417 (PRJNA257433)

Trichinella sp. T9 strain ISS409 (PRJNA257433)

Trichinella britovi strain ISS120 (PRJNA257433)

Trichinella sp. T8 strain ISS272 (PRJNA257433)

Trichinella patagoniensis strain ISS2496 (PRJNA257433)

Soboliphyme baturini strain Alaska/Dall Island (PRJEB516)

Romanomermis culicivorax (PRJEB1358)

Schistocephalus solidus strain NST_G2 (PRJEB527)

Spirometra erinaceieuropaei (PRJEB1202)

Dibothriocephalus latus (PRJEB1206)

Hymenolepis microstoma (PRJEB124)

Rodentolepis nana strain Japan (PRJEB508)

Hymenolepis diminuta strain laboratory inbred isolate (PRJEB30942)

Taenia asiatica strain TASYD01 (PRJNA299871)

Taenia saginata strain TSAYD01 (PRJNA71493)

Taenia multiceps strain Gns01 (PRJNA307624)

Taenia solium strain Mexico (PRJNA170813)

Hydatigera taeniaeformis strain Spain/Canary Islands (PRJEB534)

Echinococcus granulosus strain G1 (PRJNA182977)

Echinococcus granulosus strain G1 (PRJEB121)

Echinococcus multilocularis strain Java (PRJEB122)

Echinococcus canadensis (PRJEB8992)

Echinococcus oligarthrus strain DaMi1 (PRJEB31222)

Mesocestoides corti strain Specht & Voge 1965 (PRJEB510)

Gyrodactylus salaris strain Lier (PRJNA244375)

Gyrodactylus bullatarudis strain Rox2016 (PRJNA532341)

Protopolystoma xenopodis (PRJEB1201)

Trichobilharzia regenti strain tdTriRege1.1 (PRJEB44434)

Trichobilharzia szidati strain tdTriSzid1.1 (PRJEB44434)

Heterobilharzia americana strain tdHetHame1.1 (PRJEB44434)

Schistosoma rodhaini strain tdSchRodh1.1 (PRJEB44434)

Schistosoma mansoni (PRJEA36577)

Schistosoma curassoni strain tdSchCurr1.1 (PRJEB44434)

Schistosoma bovis strain tdSchBovi1.1 (PRJEB44434)

Schistosoma guineensis strain tdSchGuin1.1 (PRJEB44434)

Schistosoma haematobium (PRJNA78265)

Schistosoma intercalatum strain tdSchInte1.1 (PRJEB44434)

Schistosoma mattheei strain tdSchMatt1.1 (PRJEB44434)

Schistosoma spindale strain tdSchSpin1.1 (PRJEB44434)

Schistosoma margrebowiei strain tdSchMarg1.1 (PRJEB44434)

Schistosoma turkestanicum strain tdSchTurk1.1 (PRJEB44434)

Schistosoma japonicum strain HuSjv2 (PRJNA520774)

Fasciola hepatica F_hepatica_1.0.allpaths.pg (PRJNA179522)

Fasciola hepatica Fasciola_10x_pilon (PRJEB25283)

Fasciola gigantica strain Uganda_cow_1 (PRJNA230515)

Fasciolopsis buski strain HT (PRJNA284521)

Echinostoma caproni strain Egypt (PRJEB1207)

Dicrocoelium dendriticum strain tdDicDend1.1 (PRJEB44434)

Opisthorchis viverrini (PRJNA222628)

Opisthorchis felineus strain AK-0245 (PRJNA413383)

Clonorchis sinensis strain Cs-k2 (PRJNA386618)

Paragonimus westermani (PRJNA454344)

Atriophallophorus winterbourni strain NZ2018 (PRJNA636673)

Schmidtea mediterranea strain S2F19 (PRJNA885486)

Macrostomum lignano strain DV1 (PRJNA371498)

Capitella teleta

Crassostrea gigas

Mus musculus reference (CL57BL6) strain

Rattus norvegicus strain BN/NHsdMcwi

Homo sapiens

Danio rerio

Ciona intestinalis

Nematostella vectensis strain CH2 x CH6

Trichoplax adhaerens strain Grell-BS-1999

Amphimedon queenslandica

Schizosaccharomyces pombe 972h-

Saccharomyces cerevisiae S288C