Comparative Genomics

For full details of The protein tree pipeline and the subsequent prediction of homologues, see the Ensembl Compara documentation.

• Overview
• Gene tree coverage and Gene QC for each species
• Size of gene trees (split by their root taxon)
• Gene tree nodes, and the inference of speciation / duplication events

Overall Summary

Legend
Internal nodes (ancestral taxa)	Node types	Speciations	Duplications	Dubious nodes
Leaves (extant species)	Gene tree coverage	Genes in multi-species trees	Genes in single-species trees	Orphaned genes
	Gene QC	Validated genes	Short genes	Long genes	Split genes

Nematostella vectensis strain CH2 x CH6

Trichoplax adhaerens strain Grell-BS-1999

Rattus norvegicus strain BN/NHsdMcwi

Mus musculus reference (CL57BL6) strain

Homo sapiens

Danio rerio

Ciona intestinalis

Capitella teleta

Crassostrea gigas

Trichinella zimbabwensis strain ISS1029 (PRJNA257433)

Trichinella papuae strain ISS1980 (PRJNA257433)

Trichinella pseudospiralis strain ISS13 (PRJNA257433)

Trichinella nativa strain ISS10 (PRJNA257433)

Trichinella sp. T6 strain ISS34 (PRJNA257433)

Trichinella murrelli strain ISS417 (PRJNA257433)

Trichinella sp. T9 strain ISS409 (PRJNA257433)

Trichinella britovi strain ISS120 (PRJNA257433)

Trichinella sp. T8 strain ISS272 (PRJNA257433)

Trichinella patagoniensis strain ISS2496 (PRJNA257433)

Trichinella spiralis strain ISS 195 (PRJNA12603)

Trichinella nelsoni strain ISS37 (PRJNA257433)

Trichuris trichiura strain Republic of Ecuador (PRJEB535)

Trichuris suis (PRJNA179528)

Trichuris muris (PRJEB126)

Soboliphyme baturini strain Alaska/Dall Island (PRJEB516)

Romanomermis culicivorax (PRJEB1358)

Panagrolaimus sp. PS1159 (PRJEB32708)

Panagrolaimus davidi (PRJEB32708)

Panagrolaimus sp. ES5 (PRJEB32708)

Panagrolaimus superbus (PRJEB32708)

Panagrolaimus sp. JU765 (PRJEB32708)

Halicephalobus mephisto (PRJNA528747)

Halicephalobus sp. NKZ332 (PRJNA555616)

Panagrellus redivivus (PRJNA186477)

Acrobeloides nanus (PRJEB26554)

Bursaphelenchus xylophilus strain Ka4C1 (PRJEB40022)

Bursaphelenchus xylophilus ASM23113v1_submitted (PRJEA64437)

Bursaphelenchus okinawaensis strain SH1 (PRJEB40023)

Aphelenchoides fujianensis strain Dali (PRJNA834627)

Aphelenchoides besseyi strain APVT (PRJNA834627)

Aphelenchoides bicaudatus strain Fsh (PRJNA834627)

Meloidogyne arenaria strain A2-O Okinawa_01 (PRJNA438575)

Meloidogyne javanica strain VW4 (PRJNA340324)

Meloidogyne floridensis strain SJF1 (PRJNA340324)

Meloidogyne incognita (PRJEB8714)

Meloidogyne enterolobii strain L30 (PRJNA340324)

Meloidogyne hapla strain VW9 (PRJNA29083)

Meloidogyne graminicola (PRJNA411966)

Meloidogyne chitwoodi strain Race1 (PRJNA666745)

Globodera pallida strain D383 (PRJNA764088)

Globodera pallida strain Lindley (PRJEB123)

Globodera rostochiensis strain Ro1 (PRJEB13504)

Heterodera schachtii strain Bonn (PRJNA722882)

Heterodera glycines strain TN10 (PRJNA381081)

Ditylenchus dipsaci strain pooled J2 (PRJNA498219)

Ditylenchus destructor strain Dd01 (PRJNA312427)

Strongyloides papillosus strain LIN (PRJEB525)

Strongyloides venezuelensis (PRJEB530)

Strongyloides stercoralis strain PV0001 (PRJEB528)

Strongyloides ratti (PRJEB125)

Parastrongyloides trichosuri strain KNP (PRJEB515)

Rhabditophanes sp. KR3021 strain kr 3021 (PRJEB1297)

Steinernema monticolum (PRJNA205067)

Steinernema feltiae strain NW (PRJNA353610)

Steinernema scapterisci (PRJNA204942)

Steinernema carpocapsae (PRJNA202318)

Steinernema glaseri (PRJNA204943)

Oscheius tipulae strain CEW1 (PRJNA644888)

Oscheius tipulae Oscheius_tipulae_assembly_v2 (PRJEB15512)

Diploscapter pachys strain PF1309 (PRJNA280107)

Diploscapter coronatus strain PDL0010 (PRJDB3143)

Caenorhabditis brenneri (PRJNA20035)

Caenorhabditis tropicalis (PRJNA53597)

Caenorhabditis nigoni strain JU1422 (PRJNA384657)

Caenorhabditis briggsae (PRJNA10731)

Caenorhabditis zanzibari strain JU2190 (PRJEB12596)

Caenorhabditis tribulationis strain JU2818 (PRJEB12608)

Caenorhabditis sinica (PRJNA194557)

Caenorhabditis remanei C_remanei-15.0.1 (PRJNA53967)

Caenorhabditis remanei strain PX506 (PRJNA577507)

Caenorhabditis latens (PRJNA248912)

Caenorhabditis inopinata (PRJDB5687)

Caenorhabditis elegans strain N2 (PRJNA13758)

Caenorhabditis panamensis (PRJEB28259)

Caenorhabditis waitukubuli strain NIC564 (PRJEB12602)

Caenorhabditis becei strain QG2083 (PRJEB28243)

Caenorhabditis sulstoni strain JU2788 (PRJEB12601)

Caenorhabditis japonica (PRJNA12591)

Caenorhabditis uteleia strain JU2585 (PRJEB12600)

Caenorhabditis angaria (PRJNA51225)

Caenorhabditis quiockensis strain JU2809 (PRJEB11354)

Caenorhabditis bovis (PRJEB34497)

Caenorhabditis auriculariae strain NKZ352 (PRJEB40642)

Caenorhabditis parvicauda (PRJEB12595)

Mesorhabditis belari (PRJEB30104)

Angiostrongylus costaricensis strain Costa Rica (PRJEB494)

Angiostrongylus vasorum strain ZH-2019-22 (PRJNA663250)

Angiostrongylus cantonensis strain Guangzhou (PRJNA350391)

Dictyocaulus viviparus (PRJNA72587)

Nippostrongylus brasiliensis (PRJEB511)

Heligmosomoides polygyrus (PRJEB15396)

Haemonchus contortus (PRJEB506)

Haemonchus placei strain MHpl1 (PRJEB509)

Teladorsagia circumcincta (PRJNA72569)

Strongylus vulgaris strain USA/Kentucky (PRJEB531)

Cylicostephanus goldi strain England/Cheshire (PRJEB498)

Oesophagostomum dentatum strain OD-Hann (PRJNA72579)

Necator americanus strain N. amaericanus Hunan isolate (PRJNA72135)

Ancylostoma duodenale strain Baltimore (PRJNA72581)

Ancylostoma caninum strain Baltimore (PRJNA72585)

Ancylostoma ceylanicum strain HY135 (PRJNA231479)

Heterorhabditis bacteriophora strain M31e (PRJNA13977)

Pristionchus exspectatus (PRJEB46690)

Pristionchus pacificus strain PS312 (PRJNA12644)

Pristionchus arcanus (PRJEB27334)

Pristionchus maxplancki (PRJEB27334)

Pristionchus japonicus (PRJEB27334)

Pristionchus mayeri (PRJEB27334)

Pristionchus entomophagus (PRJEB27334)

Pristionchus fissidentatus (PRJEB27334)

Parapristionchus giblindavisi (PRJEB53331)

Micoletzkya japonica (PRJEB27334)

Parascaris univalens strain PG01 (PRJNA386823)

Parascaris equorum (PRJEB514)

Ascaris lumbricoides strain Republic of Ecuador (PRJEB4950)

Ascaris suum strain AG01 (PRJNA62057)

Toxocara canis strain PN_DK_2014 (PRJNA248777)

Anisakis simplex (PRJEB496)

Onchocerca ochengi strain Ngaoundere (PRJEB1204)

Onchocerca volvulus strain O. volvulus Cameroon isolate (PRJEB513)

Onchocerca flexuosa strain Red Deer (PRJNA230512)

Dirofilaria immitis (PRJEB1797)

Brugia malayi strain FR3 (PRJNA10729)

Brugia timori strain Flores island/ Indonesia (PRJEB4663)

Brugia pahangi strain Scotland/Glasgow (PRJEB497)

Wuchereria bancrofti strain pt0022 (PRJNA275548)

Loa loa strain CAT (PRJNA246086)

Cercopithifilaria johnstoni (PRJEB47283)

Acanthocheilonema viteae (PRJEB1697)

Litomosoides sigmodontis strain Bain lab strain (PRJEB3075)

Elaeophora elaphi (PRJEB502)

Thelazia callipaeda strain Switzerland/Ticino (PRJEB1205)

Gongylonema pulchrum strain Japan/Hokkaido (PRJEB505)

Dracunculus medinensis (PRJEB500)

Setaria digitata strain RSCHEM2018 (PRJNA479729)

Enterobius vermicularis strain Spain/Canary Islands (PRJEB503)

Syphacia muris strain Spain/Valencia (PRJEB524)

Plectus sambesii strain ES601 (PRJNA390260)

Schmidtea mediterranea strain S2F19 (PRJNA885486)

Macrostomum lignano strain DV1 (PRJNA371498)

Schistocephalus solidus strain NST_G2 (PRJEB527)

Spirometra erinaceieuropaei (PRJEB1202)

Dibothriocephalus latus (PRJEB1206)

Taenia asiatica strain TASYD01 (PRJNA299871)

Taenia saginata strain TSAYD01 (PRJNA71493)

Taenia multiceps strain Gns01 (PRJNA307624)

Taenia solium strain Mexico (PRJNA170813)

Hydatigera taeniaeformis strain Spain/Canary Islands (PRJEB534)

Echinococcus granulosus strain G1 (PRJEB121)

Echinococcus granulosus strain G1 (PRJNA182977)

Echinococcus multilocularis strain Java (PRJEB122)

Echinococcus canadensis (PRJEB8992)

Echinococcus oligarthrus strain DaMi1 (PRJEB31222)

Rodentolepis nana strain Japan (PRJEB508)

Hymenolepis microstoma (PRJEB124)

Hymenolepis diminuta strain laboratory inbred isolate (PRJEB30942)

Mesocestoides corti strain Specht & Voge 1965 (PRJEB510)

Gyrodactylus salaris strain Lier (PRJNA244375)

Gyrodactylus bullatarudis strain Rox2016 (PRJNA532341)

Protopolystoma xenopodis (PRJEB1201)

Fasciola hepatica Fasciola_10x_pilon (PRJEB25283)

Fasciola hepatica F_hepatica_1.0.allpaths.pg (PRJNA179522)

Fasciola gigantica strain Uganda_cow_1 (PRJNA230515)

Echinostoma caproni strain Egypt (PRJEB1207)

Fasciolopsis buski strain HT (PRJNA284521)

Dicrocoelium dendriticum strain tdDicDend1.1 (PRJEB44434)

Opisthorchis viverrini (PRJNA222628)

Opisthorchis felineus strain AK-0245 (PRJNA413383)

Clonorchis sinensis strain Cs-k2 (PRJNA386618)

Paragonimus westermani (PRJNA454344)

Atriophallophorus winterbourni strain NZ2018 (PRJNA636673)

Schistosoma bovis strain tdSchBovi1.1 (PRJEB44434)

Schistosoma curassoni strain tdSchCurr1.1 (PRJEB44434)

Schistosoma guineensis strain tdSchGuin1.1 (PRJEB44434)

Schistosoma haematobium (PRJNA78265)

Schistosoma intercalatum strain tdSchInte1.1 (PRJEB44434)

Schistosoma mattheei strain tdSchMatt1.1 (PRJEB44434)

Schistosoma margrebowiei strain tdSchMarg1.1 (PRJEB44434)

Schistosoma spindale strain tdSchSpin1.1 (PRJEB44434)

Schistosoma mansoni (PRJEA36577)

Schistosoma rodhaini strain tdSchRodh1.1 (PRJEB44434)

Schistosoma turkestanicum strain tdSchTurk1.1 (PRJEB44434)

Schistosoma japonicum strain HuSjv2 (PRJNA520774)

Trichobilharzia regenti strain tdTriRege1.1 (PRJEB44434)

Trichobilharzia szidati strain tdTriSzid1.1 (PRJEB44434)

Heterobilharzia americana strain tdHetHame1.1 (PRJEB44434)

Drosophila melanogaster

Ixodes scapularis strain Wikel

Amphimedon queenslandica

Schizosaccharomyces pombe 972h-

Saccharomyces cerevisiae S288C