Schmidtea mediterranea - public RNASeq studies
Table of Contents
- Transcriptome analysis reveals strain-specific and conserved stemness genes in Schmidtea mediterranea
- Planarian stem cell transcriptome
- Schmidtea mediterranea strain:CIW4 Transcriptome or Gene expression
- Schmidtea mediterranea FoxD-GFP RNAi Differential Expression Analysis
- Wound-induced neoblast specialization in S. mediterranea
- RNA Seq analysis of Schmidtea mediterranea treated with RNAi against chd4, p53, or unc22 to identify factors involved in neoblast differentiation.
- RNA Seq analysis of sorted Schmidtea mediterranea X1 and Xins cells to identify factors specific to neoblasts
- Planarian yorkie/YAP functions to integrate adult stem cell proliferation, organ homeostasis, and maintenance of axial patterning
- Set1 and MLL1/2 target distinct sets of functionally different genomic loci in vivo: An in depth RNA-seq analysis of H3K4me3 targets in vivo and upon Set1 and mll1 knockdown
- Conserved functional antagonism between CELF and MBNL proteins regulates stem cell-specific alternative splicing and regeneration in planarians (dataset 3)
- HOX gene complement and expression in the planarian Schmidtea mediterranea
- RNA Seq analysis of gene expression in Planaria at 24, 48, 72, and 96 hours after exposure to 6k rad of gamma irradiation.
- RNA Seq analysis of neoblasts from Schmidtea mediterranea treated with RNAi against zfp1, p53, or unc22 to identify factors involved in neoblast differentiation.
- RNA Seq analysis in flatworm following 6, 12, or 18 day treatment with RNAi against Pax5, Sox8, or Zfp1, relative to unc22 to identify transcriptional targets.
- Schmidtea mediterranea isolate:CIW4 Raw sequence reads
- Gene expression profiling of planarian heads or cephalic ganglia after inhibition of Hedgehog signaling pathway genes by RNAi
- Schmidtea mediterranea Raw sequence reads (sexual strain and CPEB knockdowns)
- RNA Seq analysis of gene expression during Schmidtea mediterranea embryogenesis, including yolk and adult samples
- Egf signaling directs neoblast repopulation by regulating asymmetric cell division in planarians
- NPY-8-internalizing cells transcriptome in Schmidtea mediterranea
- Yorkie is required to restrict the injury responses in planarians
- Gene expression profiling of intact individual planarians during homeostatic tissue turnover after inhibition of myoD or nkx1-1
- Gene expression profiling of regenerating planarian tails after inhibition of myoD and follistatin
- The planarian TCF/LEF factor Smed-tcf1 is required for the regeneration of dorsal-lateral neuronal subtypes
- Schmidtea mediterranea Integrator complex subunit knockdown and small RNA sequencing
- A tetraspanin family member functionally resolves and facilitates the purification of adult pluripotent stem cells used for whole-body regeneration (Bulk)
- Sexual Regeneration RNAseq
- Smed-myb-1 specifies early temporal identity during planarian epidermal differentiation
- RNA sequencing of pole-containing anterior tip regions in planarian Schmidtea mediterranea
- RNA sequencing of the head and tail of planarian Schmidtea mediterranea during nr4A inhibition
- Planarians recruit piRNAs for mRNA turnover in adult stem cells
- Transcriptomic analysis of planarians under simulated microgravity and hypergravity
- Tnfaip2/Exoc3 driven lipid metabolism is essential for stem cell differentiation & organ homeostasis [Schmidtea mediterranea]
- Conserved targets of Wnt signaling in Schmidtea mediterranea and Hofstenia miamia
- Gene expression profiling for: activin-2 is required for regeneration of polarity on the planarian anterior-posterior axis
- 38 other studies
Analysed
SRP009681: Transcriptome analysis reveals strain-specific and conserved stemness genes in Schmidtea mediterranea
Genetics and Genome Sciences, University of Connecticut Health Center
Design: 7 conditions
| Condition | num. replicates | Cell type | Strain | Treatment |
|---|---|---|---|---|
| Asexual, Irradiated | 1 | Asexual | Irradiated | |
| Asexual, Non-irradiated | 2 | Asexual | Non-irradiated | |
| Sexual, Irradiated | 1 | Sexual | Irradiated | |
| Sexual, Non-irradiated | 1 | Sexual | Non-irradiated | |
| X1 neoblast, Sexual, Non-irradiated | 1 | X1 neoblast | Sexual | Non-irradiated |
| X2 neoblast, Sexual, Non-irradiated | 1 | X2 neoblast | Sexual | Non-irradiated |
| Xins differentiated cells, Sexual, Non-irradiated | 1 | Xins differentiated cells | Sexual | Non-irradiated |
SRP013005: Planarian stem cell transcriptome
Pearson, Molecular Genetics, Hospital for Sick Children
Design: 3 conditions
| Condition | num. replicates | Organism part |
|---|---|---|
| differentiated tissues | 2 | all tissues minus stem cells and progeny |
| stem cell progeny | 2 | stem cell progeny |
| stem cells | 2 | stem cells, neoblasts |
SRP023151: Schmidtea mediterranea strain:CIW4 Transcriptome or Gene expression
Hospital for Sick Children
Transcription factors lhx1/5-1 and pitx are required for the maintenance and regeneration of serotonergic neurons in planarians. (Currie .. Pearson, 2013)
Planarian yorkie/YAP functions to integrate adult stem cell proliferation, organ homeostasis and maintenance of axial patterning. (Lin .. Pearson, 2014)
Design: 3 conditions
| Condition | num. replicates | Organism part | Strain | Treatment |
|---|---|---|---|---|
| control(RNAi) | 3 | whole organism | asexual ciw4 | control(RNAi) |
| lhx1/5-1(RNAi) | 3 | whole organism | asexual ciw4 | lhx1/5-1(RNAi) |
| pitx(RNAi) | 3 | whole organism | asexual ciw4 | pitx(RNAi) |
SRP031467: Schmidtea mediterranea FoxD-GFP RNAi Differential Expression Analysis
Max-Planck Institute for Molecular Biomedicine
Design: 4 conditions
| Condition | num. replicates | RNAi | Timepoint |
|---|---|---|---|
| FoxD, 0d | 2 | FoxD | 0d |
| FoxD, 3d | 2 | FoxD | 3d |
| GFP, 0d | 2 | GFP | 0d |
| GFP, 3d | 2 | GFP | 3d |
SRP041596: Wound-induced neoblast specialization in S. mediterranea
Reddien Lab, Biology Department, Whitehead Institute, MIT
Design: 3 conditions
| Condition | num. replicates | Cell isolation method | Cell type | Strain | Timepoint | Treatment |
|---|---|---|---|---|---|---|
| 0hr, control | 3 | FACS Isolated | pre-pharyngeal X1 cells | Asexual | 0hr | control |
| 48hr, anterior wound | 3 | FACS Isolated | pre-pharyngeal X1 cells | Asexual | 48hr | anterior wound |
| 48hr, posterior wound | 3 | FACS Isolated | pre-pharyngeal X1 cells | Asexual | 48hr | posterior wound |
SRP062861: RNA Seq analysis of Schmidtea mediterranea treated with RNAi against chd4, p53, or unc22 to identify factors involved in neoblast differentiation.
Seidel, Genomics, Stowers Institute
Design: 17 conditions
| Condition | num. replicates | RNAi | Time after RNAi treatment | Organism part |
|---|---|---|---|---|
| CHD4, 12 days | 3 | CHD4 | 12 days | whole organism |
| CHD4, 15 days | 3 | CHD4 | 15 days | whole organism |
| CHD4, 3 days | 3 | CHD4 | 3 days | whole organism |
| CHD4, 6 days | 3 | CHD4 | 6 days | whole organism |
| CHD4, 9 days | 3 | CHD4 | 9 days | whole organism |
| p53, 12 days | 3 | p53 | 12 days | whole organism |
| p53, 15 days | 3 | p53 | 15 days | whole organism |
| p53, 18 days | 2 | p53 | 18 days | whole organism |
| p53, 3 days | 3 | p53 | 3 days | whole organism |
| p53, 6 days | 3 | p53 | 6 days | whole organism |
| p53, 9 days | 3 | p53 | 9 days | whole organism |
| unc22, 12 days | 3 | unc22 | 12 days | whole organism |
| unc22, 15 days | 3 | unc22 | 15 days | whole organism |
| unc22, 18 days | 3 | unc22 | 18 days | whole organism |
| unc22, 3 days | 3 | unc22 | 3 days | whole organism |
| unc22, 6 days | 3 | unc22 | 6 days | whole organism |
| unc22, 9 days | 3 | unc22 | 9 days | whole organism |
SRP063836: RNA Seq analysis of sorted Schmidtea mediterranea X1 and Xins cells to identify factors specific to neoblasts
Wills Lab, Biochemistry, University of Washington
Design: 2 conditions
| Condition | num. replicates | Cell type | Developmental stage |
|---|---|---|---|
| X1 | 4 | X1 | adult |
| Xins | 4 | Xins | adult |
SRP064425: Planarian yorkie/YAP functions to integrate adult stem cell proliferation, organ homeostasis, and maintenance of axial patterning
Pearson, Molecular Genetics, Hospital for Sick Children
Design: 2 conditions
| Condition | num. replicates | Organism part | RNAi | Strain |
|---|---|---|---|---|
| unc22 (control) | 3 | whole animal, mascerated | unc22 (control) | Asexual CIW4 |
| yorkie | 3 | whole animal, mascerated | yorkie | Asexual CIW4 |
SRP064848: Set1 and MLL1/2 target distinct sets of functionally different genomic loci in vivo: An in depth RNA-seq analysis of H3K4me3 targets in vivo and upon Set1 and mll1 knockdown
Wills Lab, Biochemistry, University of Washington
Design: 14 conditions
| Condition | num. replicates | Cell type | Organism part | RNAi | Timepoint |
|---|---|---|---|---|---|
| X1, mll1/2, 12 days | 4 | X1 | mll1/2 | 12 days | |
| X1, mll1/2, 9 days | 4 | X1 | mll1/2 | 9 days | |
| X1, set1, 6 days | 4 | X1 | set1 | 6 days | |
| X1, set1, 9 days | 4 | X1 | set1 | 9 days | |
| X1, unc22, 12 days | 4 | X1 | unc22 | 12 days | |
| X1, unc22, 6 days | 4 | X1 | unc22 | 6 days | |
| X1, unc22, 9 days | 8 | X1 | unc22 | 9 days | |
| whole organism, mll1/2, 12 days | 4 | whole organism | mll1/2 | 12 days | |
| whole organism, mll1/2, 9 days | 4 | whole organism | mll1/2 | 9 days | |
| whole organism, set1, 6 days | 4 | whole organism | set1 | 6 days | |
| whole organism, set1, 9 days | 4 | whole organism | set1 | 9 days | |
| whole organism, unc22, 12 days | 4 | whole organism | unc22 | 12 days | |
| whole organism, unc22, 6 days | 4 | whole organism | unc22 | 6 days | |
| whole organism, unc22, 9 days | 8 | whole organism | unc22 | 9 days |
SRP066867: Conserved functional antagonism between CELF and MBNL proteins regulates stem cell-specific alternative splicing and regeneration in planarians (dataset 3)
Systems Biology Unit, Centre for Genomic Regulation
Design: 21 conditions
| Condition | num. replicates | Cellular fraction | Experiment | Strain |
|---|---|---|---|---|
| Whole worm treated with dsRNA against Celf genes | 1 | Whole worm | Celf siRNA | Berlin-1 strain asexual type |
| Whole worm treated with dsRNA against Esrp genes | 1 | Whole worm | Esrp siRNA | Berlin-1 strain asexual type |
| Whole worm treated with dsRNA against GFP | 1 | Whole worm | Control (GFP siRNA) | Berlin-1 strain asexual type |
| Whole worm treated with dsRNA against Mbnl genes | 1 | Whole worm | Mbnl siRNA | Berlin-1 strain asexual type |
| Whole worm treated with dsRNA against Nova genes | 1 | Whole worm | Nova siRNA | Berlin-1 strain asexual type |
| Whole worm treated with dsRNA against Ptbp genes | 1 | Whole worm | Ptbp siRNA | Berlin-1 strain asexual type |
| Whole worm treated with dsRNA against Rbfox genes | 1 | Whole worm | RbfoxS siRNA | Berlin-1 strain asexual type |
| Whole worm treated with dsRNA against Rbfox1 | 1 | Whole worm | Rbfox1 siRNA | Berlin-1 strain asexual type |
| Whole worm treated with dsRNA against bruli | 1 | Whole worm | Bruli siRNA | Berlin-1 strain asexual type |
| X1 fraction from Mbnl knocked down worms | 2 | X1 cell fraction | Mbnl siRNA | Berlin-1 strain asexual type |
| X1 fraction from bruli knocked down worms | 2 | X1 cell fraction | Bruli siRNA | Berlin-1 strain asexual type |
| X1 fraction from control worms | 2 | X1 cell fraction | Control (GFP siRNA) | Berlin-1 strain asexual type |
| X1 fraction from wild type worms | 1 | X1 cell fraction | Wild type | Berlin-1 strain asexual type |
| X2 fraction from Mbnl knocked down worms | 1 | X2 cell fraction | Mbnl siRNA | Berlin-1 strain asexual type |
| X2 fraction from bruli knocked down worms | 1 | X2 cell fraction | Bruli siRNA | Berlin-1 strain asexual type |
| X2 fraction from control worms | 1 | X2 cell fraction | Control (GFP siRNA) | Berlin-1 strain asexual type |
| X2 fraction from wild type worms | 1 | X2 cell fraction | Wild type | Berlin-1 strain asexual type |
| Xins fraction from Mbnl knocked down worms | 2 | Xins cell fraction | Mbnl siRNA | Berlin-1 strain asexual type |
| Xins fraction from bruli knocked down worms | 2 | Xins cell fraction | Bruli siRNA | Berlin-1 strain asexual type |
| Xins fraction from control worms | 2 | Xins cell fraction | Control (GFP siRNA) | Berlin-1 strain asexual type |
| Xins fraction from wild type worms | 2 | Xins cell fraction | Wild type | Berlin-1 strain asexual type |
SRP071204: HOX gene complement and expression in the planarian Schmidtea mediterranea
Pearson, Molecular Genetics, Hospital for Sick Children
Design: 6 conditions
| Condition | num. replicates | Plane of amputation | Strain | Treatment |
|---|---|---|---|---|
| Wildtype zone 1 | 2 | posterior extent of the photoreceptors | Asexual CIW4 | Amputation fragment |
| Wildtype zone 2 | 2 | posterior extent of the brain | Asexual CIW4 | Amputation fragment |
| Wildtype zone 3 | 2 | anterior extent of the pharynx | Asexual CIW4 | Amputation fragment |
| Wildtype zone 4 | 2 | posterior extent of the pharynx | Asexual CIW4 | Amputation fragment |
| Wildtype zone 5 | 2 | midpoint between posterior pharynx and tail tip | Asexual CIW4 | Amputation fragment |
| Wildtype zone 6 | 2 | last remaining piece of tail tip | Asexual CIW4 | Amputation fragment |
SRP073670: RNA Seq analysis of gene expression in Planaria at 24, 48, 72, and 96 hours after exposure to 6k rad of gamma irradiation.
Seidel, Genomics, Stowers Institute
Design: 5 conditions
| Condition | num. replicates | Timepoint | Treatment |
|---|---|---|---|
| 0 hours | 3 | 0 hours | |
| 24 hours, 6000 rads | 3 | 24 hours | 6000 rads |
| 48 hours, 6000 rads | 3 | 48 hours | 6000 rads |
| 72 hours, 6000 rads | 3 | 72 hours | 6000 rads |
| 96 hours, 6000 rads | 3 | 96 hours | 6000 rads |
SRP073671: RNA Seq analysis of neoblasts from Schmidtea mediterranea treated with RNAi against zfp1, p53, or unc22 to identify factors involved in neoblast differentiation.
Seidel, Genomics, Stowers Institute
Design: 3 conditions
| Condition | num. replicates | Cell type | RNAi |
|---|---|---|---|
| p53 | 12 | X1 | p53 |
| unc22 | 11 | X1 | unc22 |
| zfp1 | 12 | X1 | zfp1 |
SRP073672: RNA Seq analysis in flatworm following 6, 12, or 18 day treatment with RNAi against Pax5, Sox8, or Zfp1, relative to unc22 to identify transcriptional targets.
Seidel, Genomics, Stowers Institute
Design: 12 conditions
| Condition | num. replicates | Organism part | RNAi | Timepoint |
|---|---|---|---|---|
| pax5, 12 days | 4 | whole_organism | pax5 | 12 days |
| pax5, 18 days | 4 | whole_organism | pax5 | 18 days |
| pax5, 6 days | 4 | whole_organism | pax5 | 6 days |
| sox8, 12 days | 4 | whole_organism | sox8 | 12 days |
| sox8, 18 days | 4 | whole_organism | sox8 | 18 days |
| sox8, 6 days | 4 | whole_organism | sox8 | 6 days |
| unc22, 12 days | 4 | whole_organism | unc22 | 12 days |
| unc22, 18 days | 4 | whole_organism | unc22 | 18 days |
| unc22, 6 days | 4 | whole_organism | unc22 | 6 days |
| zfp1, 12 days | 4 | whole_organism | zfp1 | 12 days |
| zfp1, 18 days | 4 | whole_organism | zfp1 | 18 days |
| zfp1, 6 days | 4 | whole_organism | zfp1 | 6 days |
SRP074139: Schmidtea mediterranea isolate:CIW4 Raw sequence reads
University of Illinois at Urbana-Champaign
Design: 5 conditions
| Condition | num. replicates | Organism part | Strain | Timepoint | Treatment |
|---|---|---|---|---|---|
| 12h regenerate | 3 | tail | CIW4 | 12h | postpharyngeal cut |
| 36h regenerate | 3 | tail | CIW4 | 36h | postpharyngeal cut |
| 72h regenerate | 3 | tail | CIW4 | 72h | postpharyngeal cut |
| Cut control | 3 | tail | CIW4 | postpharyngeal cut | |
| Whole control | 3 | whole organism | CIW4 |
SRP074285: Gene expression profiling of planarian heads or cephalic ganglia after inhibition of Hedgehog signaling pathway genes by RNAi
Whitehead Institute for Biomedical Research
Hedgehog signaling regulates gene expression in planarian glia. (Wang .. Reddien, 2016)
Design: 4 conditions
| Condition | num. replicates | Organism part | RNAi | Strain |
|---|---|---|---|---|
| cephalic ganglia, hedgehog, S2F1L3F2 | 2 | cephalic ganglia | hedgehog | S2F1L3F2 |
| cephalic ganglia, patched, S2F1L3F2 | 2 | cephalic ganglia | patched | S2F1L3F2 |
| cephalic ganglia, unc-22, S2F1L3F2 | 2 | cephalic ganglia | unc-22 | S2F1L3F2 |
| head fragment, unc-22, CIW4 | 2 | head fragment | unc-22 | CIW4 |
SRP074326: Schmidtea mediterranea Raw sequence reads (sexual strain and CPEB knockdowns)
Wright State University
Design: 3 conditions
| Condition | num. replicates | Geographic location | Isolation source | Organism part | RNAi | Strain |
|---|---|---|---|---|---|---|
| CPEB1 | 3 | Spain | Newmark Laboratory (Illinois) | whole organism | CPEB1 | sexual |
| CPEB2 | 3 | Spain | Newmark Laboratory (Illinois) | whole organism | CPEB2 | sexual |
| control | 3 | Spain | Newmark Laboratory (Illinois) | whole organism | sexual |
SRP076161: RNA Seq analysis of gene expression during Schmidtea mediterranea embryogenesis, including yolk and adult samples
Seidel, Genomics, Stowers Institute
Design: 10 conditions
| Condition | num. replicates | Biotype | Day | Developmental stage |
|---|---|---|---|---|
| asexual, asexual CIW4 adult | 4 | asexual | asexual CIW4 adult | |
| sexual, 10, Stage 7 embryo | 4 | sexual | 10 | Stage 7 embryo |
| sexual, 14, Stage 8 embryo | 4 | sexual | 14 | Stage 8 embryo |
| sexual, 2, Stage 2 embryo | 4 | sexual | 2 | Stage 2 embryo |
| sexual, 3, Stage 3 embryo | 4 | sexual | 3 | Stage 3 embryo |
| sexual, 4, Stage 4 embryo | 4 | sexual | 4 | Stage 4 embryo |
| sexual, 6, Stage 5 embryo | 4 | sexual | 6 | Stage 5 embryo |
| sexual, 9, Stage 6 embryo | 4 | sexual | 9 | Stage 6 embryo |
| sexual, Yolk | 4 | sexual | Yolk | |
| sexual, virgin, sexuallly mature adult | 4 | sexual | virgin, sexuallly mature adult |
SRP077922: Egf signaling directs neoblast repopulation by regulating asymmetric cell division in planarians
Seidel, Genomics, Stowers Institute
Downloads
Design: 36 conditions
| Condition | num. replicates | Organism part | RNAi | Strain | Timepoint |
|---|---|---|---|---|---|
| whole organism, Egfr3 3 feedings NT, 9 days | 4 | whole organism | Egfr3 3 feedings NT | asexual CIW4 | 9 days |
| whole organism, Egfr3 6 feedings SR, 22 days | 4 | whole organism | Egfr3 6 feedings SR | asexual CIW4 | 22 days |
| whole organism, Egfr3 6 feedings SR, 23 days | 4 | whole organism | Egfr3 6 feedings SR | asexual CIW4 | 23 days |
| whole organism, Egfr3 6 feedings SR, 26 days | 4 | whole organism | Egfr3 6 feedings SR | asexual CIW4 | 26 days |
| whole organism, Egfr3 6 feedings SR, 28 days | 4 | whole organism | Egfr3 6 feedings SR | asexual CIW4 | 28 days |
| whole organism, Egfr3 6 feedings SR, 30 days | 4 | whole organism | Egfr3 6 feedings SR | asexual CIW4 | 30 days |
| whole organism, Egfr3 6 feedings SR, 32 days | 4 | whole organism | Egfr3 6 feedings SR | asexual CIW4 | 32 days |
| whole organism, Egfr3 8 feedings NT, 30 days | 4 | whole organism | Egfr3 8 feedings NT | asexual CIW4 | 30 days |
| whole organism, Unc22 3 feedings NT, 9 days | 4 | whole organism | Unc22 3 feedings NT | asexual CIW4 | 9 days |
| whole organism, Unc22 6 feedings SR, 22 days | 4 | whole organism | Unc22 6 feedings SR | asexual CIW4 | 22 days |
| whole organism, Unc22 6 feedings SR, 23 days | 4 | whole organism | Unc22 6 feedings SR | asexual CIW4 | 23 days |
| whole organism, Unc22 6 feedings SR, 26 days | 4 | whole organism | Unc22 6 feedings SR | asexual CIW4 | 26 days |
| whole organism, Unc22 6 feedings SR, 28 days | 4 | whole organism | Unc22 6 feedings SR | asexual CIW4 | 28 days |
| whole organism, Unc22 6 feedings SR, 30 days | 4 | whole organism | Unc22 6 feedings SR | asexual CIW4 | 30 days |
| whole organism, Unc22 6 feedings SR, 32 days | 4 | whole organism | Unc22 6 feedings SR | asexual CIW4 | 32 days |
| whole organism, Unc22 8 feedings NT, 30 days | 4 | whole organism | Unc22 8 feedings NT | asexual CIW4 | 30 days |
| whole organism, nrg6 3 feedings NT, 9 days | 4 | whole organism | nrg6 3 feedings NT | asexual CIW4 | 9 days |
| whole organism, nrg6 6 feedings SR, 22 days | 4 | whole organism | nrg6 6 feedings SR | asexual CIW4 | 22 days |
| whole organism, nrg6 6 feedings SR, 23 days | 4 | whole organism | nrg6 6 feedings SR | asexual CIW4 | 23 days |
| whole organism, nrg6 6 feedings SR, 26 days | 4 | whole organism | nrg6 6 feedings SR | asexual CIW4 | 26 days |
| whole organism, nrg6 6 feedings SR, 28 days | 4 | whole organism | nrg6 6 feedings SR | asexual CIW4 | 28 days |
| whole organism, nrg6 6 feedings SR, 30 days | 4 | whole organism | nrg6 6 feedings SR | asexual CIW4 | 30 days |
| whole organism, nrg6 6 feedings SR, 32 days | 4 | whole organism | nrg6 6 feedings SR | asexual CIW4 | 32 days |
| whole organism, nrg6 8 feedings NT, 30 days | 4 | whole organism | nrg6 8 feedings NT | asexual CIW4 | 30 days |
| whole organism, nrg7 3 feedings NT, 9 days | 4 | whole organism | nrg7 3 feedings NT | asexual CIW4 | 9 days |
| whole organism, nrg7 6 feedings SR, 22 days | 4 | whole organism | nrg7 6 feedings SR | asexual CIW4 | 22 days |
| whole organism, nrg7 6 feedings SR, 23 days | 4 | whole organism | nrg7 6 feedings SR | asexual CIW4 | 23 days |
| whole organism, nrg7 6 feedings SR, 26 days | 4 | whole organism | nrg7 6 feedings SR | asexual CIW4 | 26 days |
| whole organism, nrg7 6 feedings SR, 28 days | 4 | whole organism | nrg7 6 feedings SR | asexual CIW4 | 28 days |
| whole organism, nrg7 6 feedings SR, 30 days | 4 | whole organism | nrg7 6 feedings SR | asexual CIW4 | 30 days |
| whole organism, nrg7 6 feedings SR, 32 days | 4 | whole organism | nrg7 6 feedings SR | asexual CIW4 | 32 days |
| whole organism, nrg7 8 feedings NT, 30 days | 4 | whole organism | nrg7 8 feedings NT | asexual CIW4 | 30 days |
| x1, Egfr3 8 feedings NT, 30 days | 4 | x1 | Egfr3 8 feedings NT | asexual CIW4 | 30 days |
| x1, Unc22 8 feedings NT, 30 days | 4 | x1 | Unc22 8 feedings NT | asexual CIW4 | 30 days |
| x1, nrg6 8 feedings NT, 30 days | 4 | x1 | nrg6 8 feedings NT | asexual CIW4 | 30 days |
| x1, nrg7 8 feedings NT, 30 days | 4 | x1 | nrg7 8 feedings NT | asexual CIW4 | 30 days |
SRP091669: NPY-8-internalizing cells transcriptome in Schmidtea mediterranea
University of Illinois at Urbana-Champaign
Design: 2 conditions
| Condition | num. replicates | Organism part | Developmental stage | Strain |
|---|---|---|---|---|
| control dissociated cells | 4 | control dissociated cells | Mature | Sexual |
| npy-8-internalizing dissociated cells | 4 | npy-8-internalizing dissociated cells | Mature | Sexual |
SRP103921: Yorkie is required to restrict the injury responses in planarians
Pearson, Molecular Genetics, Hospital for Sick Children
Yorkie is required to restrict the injury responses in planarians. (Lin .. Pearson, 2017)
Downloads
Design: 4 conditions
| Condition | num. replicates | Organism part | Strain | Treatment |
|---|---|---|---|---|
| tail, Control RNAi | 9 | tail | Asexual CIW4 | Control RNAi |
| tail, Yki RNAi | 9 | tail | Asexual CIW4 | Yki RNAi |
| whole organism, Control RNAi | 3 | whole organism | Asexual CIW4 | Control RNAi |
| whole organism, Yki RNAi | 3 | whole organism | Asexual CIW4 | Yki RNAi |
SRP107206: Gene expression profiling of intact individual planarians during homeostatic tissue turnover after inhibition of myoD or nkx1-1
Whitehead Institute for Biomedical Research
Design: 4 conditions
| Condition | num. replicates | Organism part | RNAi | RNAi feedings | Strain |
|---|---|---|---|---|---|
| myoD, 10 | 6 | whole organism | myoD | 10 | CIW4 |
| nkx1-1, 12 | 7 | whole organism | nkx1-1 | 12 | CIW4 |
| unc-22 (control), 10 | 6 | whole organism | unc-22 (control) | 10 | CIW4 |
| unc-22 (control), 12 | 5 | whole organism | unc-22 (control) | 12 | CIW4 |
SRP107207: Gene expression profiling of regenerating planarian tails after inhibition of myoD and follistatin
Whitehead Institute for Biomedical Research
Design: 4 conditions
| Condition | num. replicates | Organism part | RNAi | RNAi feedings | Strain |
|---|---|---|---|---|---|
| fst, 6 | 12 | tail fragment | fst | 6 | CIW4 |
| myoD, 10 | 12 | tail fragment | myoD | 10 | CIW4 |
| unc-22 (control), 10 | 12 | tail fragment | unc-22 (control) | 10 | CIW4 |
| unc-22 (control), 6 | 12 | tail fragment | unc-22 (control) | 6 | CIW4 |
SRP115085: The planarian TCF/LEF factor Smed-tcf1 is required for the regeneration of dorsal-lateral neuronal subtypes
Pearson, Molecular Genetics, Hospital for Sick Children
Design: 18 conditions
| Condition | num. replicates | Organism part | Strain | Timepoint | Treatment |
|---|---|---|---|---|---|
| 1 days, APC RNAi | 1 | regenerating trunk fragments | Asexual CIW4 | 1 days | APC RNAi |
| 1 days, Bcat RNAi | 1 | regenerating trunk fragments | Asexual CIW4 | 1 days | Bcat RNAi |
| 1 days, Control RNAi | 1 | regenerating trunk fragments | Asexual CIW4 | 1 days | Control RNAi |
| 2 days, APC RNAi | 1 | regenerating trunk fragments | Asexual CIW4 | 2 days | APC RNAi |
| 2 days, Bcat RNAi | 1 | regenerating trunk fragments | Asexual CIW4 | 2 days | Bcat RNAi |
| 2 days, Control RNAi | 1 | regenerating trunk fragments | Asexual CIW4 | 2 days | Control RNAi |
| 3 days, APC RNAi | 1 | regenerating trunk fragments | Asexual CIW4 | 3 days | APC RNAi |
| 3 days, Bcat RNAi | 1 | regenerating trunk fragments | Asexual CIW4 | 3 days | Bcat RNAi |
| 3 days, Control RNAi | 1 | regenerating trunk fragments | Asexual CIW4 | 3 days | Control RNAi |
| 4 days, APC RNAi | 1 | regenerating trunk fragments | Asexual CIW4 | 4 days | APC RNAi |
| 4 days, Bcat RNAi | 1 | regenerating trunk fragments | Asexual CIW4 | 4 days | Bcat RNAi |
| 4 days, Control RNAi | 1 | regenerating trunk fragments | Asexual CIW4 | 4 days | Control RNAi |
| 5 days, APC RNAi | 1 | regenerating trunk fragments | Asexual CIW4 | 5 days | APC RNAi |
| 5 days, Bcat RNAi | 1 | regenerating trunk fragments | Asexual CIW4 | 5 days | Bcat RNAi |
| 5 days, Control RNAi | 1 | regenerating trunk fragments | Asexual CIW4 | 5 days | Control RNAi |
| 6 days, APC RNAi | 1 | regenerating trunk fragments | Asexual CIW4 | 6 days | APC RNAi |
| 6 days, Bcat RNAi | 1 | regenerating trunk fragments | Asexual CIW4 | 6 days | Bcat RNAi |
| 6 days, Control RNAi | 1 | regenerating trunk fragments | Asexual CIW4 | 6 days | Control RNAi |
SRP115287: Schmidtea mediterranea Integrator complex subunit knockdown and small RNA sequencing
Max Planck Institute for Molecular Biomedicine
Cells-in-Motion Cluster of Excellence
Max Planck Institute for Molecular Biomedicine
Stem cells and Regeneration Group
Design: 3 conditions
| Condition | num. replicates | Developmental stage | Isolate | Organism part | Strain | Treatment |
|---|---|---|---|---|---|---|
| x1 cells | 3 | adult | BCN-10 | x1 cells | asexual | |
| x1 cells, ints3 RNAi | 3 | adult | BCN-10 | x1 cells | asexual | ints3 RNAi |
| x1 cells, ints9 RNAi | 3 | adult | BCN-10 | x1 cells | asexual | ints9 RNAi |
SRP126428: A tetraspanin family member functionally resolves and facilitates the purification of adult pluripotent stem cells used for whole-body regeneration (Bulk)
Stowers Institute for Medical Research
Design: 25 conditions
| Condition | num. replicates | Cell type | Genotype | Irradiation | Organism part | Timepoint | Treatment |
|---|---|---|---|---|---|---|---|
| 24hours after 10K irradiation, whole organism | 3 | wild type | 24hours after 10K irradiation | whole organism | |||
| sorted piwi-1 high cells | 4 | sorted piwi-1 high cells | wild type | ||||
| sorted piwi-1 low cells | 4 | sorted piwi-1 low cells | wild type | ||||
| sorted piwi-1 negative cells | 4 | sorted piwi-1 negative cells | wild type | ||||
| sorted x1 cells | 3 | sorted x1 cells | wild type | ||||
| sorted x2 cells | 3 | sorted x2 cells | wild type | ||||
| sorted xins cells | 3 | sorted xins cells | wild type | ||||
| whole organism | 3 | wild type | whole organism | ||||
| whole organism, 0hr, amputation | 4 | wild type | whole organism | 0hr | amputation | ||
| whole organism, 10day, amputation | 4 | wild type | whole organism | 10day | amputation | ||
| whole organism, 12hr, amputation | 4 | wild type | whole organism | 12hr | amputation | ||
| whole organism, 14day, amputation | 4 | wild type | whole organism | 14day | amputation | ||
| whole organism, 1hr, amputation | 4 | wild type | whole organism | 1hr | amputation | ||
| whole organism, 24hr, amputation | 4 | wild type | whole organism | 24hr | amputation | ||
| whole organism, 36hr, amputation | 4 | wild type | whole organism | 36hr | amputation | ||
| whole organism, 3hr, amputation | 4 | wild type | whole organism | 3hr | amputation | ||
| whole organism, 48hr, amputation | 4 | wild type | whole organism | 48hr | amputation | ||
| whole organism, 4day, amputation | 4 | wild type | whole organism | 4day | amputation | ||
| whole organism, 5day, amputation | 4 | wild type | whole organism | 5day | amputation | ||
| whole organism, 60hr, amputation | 4 | wild type | whole organism | 60hr | amputation | ||
| whole organism, 6day, amputation | 4 | wild type | whole organism | 6day | amputation | ||
| whole organism, 6hr, amputation | 4 | wild type | whole organism | 6hr | amputation | ||
| whole organism, 72hr, amputation | 4 | wild type | whole organism | 72hr | amputation | ||
| whole organism, 7day, amputation | 4 | wild type | whole organism | 7day | amputation | ||
| whole organism, 9hr, amputation | 4 | wild type | whole organism | 9hr | amputation |
SRP126458: Sexual Regeneration RNAseq
Sanchez Alvarado Lab, Stowers Institute for Medical Research
Design: 5 conditions
| Condition | num. replicates | Organism part | Strain | Timepoint |
|---|---|---|---|---|
| trunk fragments, day 0 | 3 | trunk fragments | Sexual S2F2 | day 0 |
| trunk fragments, day 3 | 3 | trunk fragments | Sexual S2F2 | day 3 |
| trunk fragments, day 5 | 3 | trunk fragments | Sexual S2F2 | day 5 |
| trunk fragments, day 7 | 3 | trunk fragments | Sexual S2F2 | day 7 |
| whole juvenile animal | 3 | whole organism | Sexual S2F2 |
SRP158184: Smed-myb-1 specifies early temporal identity during planarian epidermal differentiation
Pearson, Molecular Genetics, Hospital for Sick Children
Design: 6 conditions
| Condition | num. replicates | Source name | Strain | Treatment |
|---|---|---|---|---|
| Asexual CIW10, myb-1 RNAi | 2 | Wildtype animals (30 animals) | Asexual CIW10 | myb-1 RNAi |
| Asexual CIW12, myb-1 RNAi | 2 | Wildtype animals (30 animals) | Asexual CIW12 | myb-1 RNAi |
| Asexual CIW14, myb-1 RNAi | 2 | Wildtype animals (30 animals) | Asexual CIW14 | myb-1 RNAi |
| Asexual CIW4, control RNAi | 2 | Wildtype animals (30 animals) | Asexual CIW4 | control RNAi |
| Asexual CIW6, control RNAi | 2 | Wildtype animals (30 animals) | Asexual CIW6 | control RNAi |
| Asexual CIW8, control RNAi | 2 | Wildtype animals (30 animals) | Asexual CIW8 | control RNAi |
SRP164884: RNA sequencing of pole-containing anterior tip regions in planarian Schmidtea mediterranea
Whitehead Institute for Biomedical Research
Design: 4 conditions
| Condition | num. replicates | Organism part | Treatment | Ploidy | Strain |
|---|---|---|---|---|---|
| non-pole-containing anterior blastema flanking region | 3 | non-pole-containing anterior blastema flanking region | 72-hours-post transverse amputation | 2N (non-dividing) | asexual CIW4 |
| non-pole-containing head tip flanking region | 3 | non-pole-containing head tip flanking region | 2N (non-dividing) | asexual CIW4 | |
| pole-containing anterior blastema region | 3 | pole-containing anterior blastema region | 72-hours-post transverse amputation | 2N (non-dividing) | asexual CIW4 |
| pole-containing head tip region | 3 | pole-containing head tip region | 2N (non-dividing) | asexual CIW4 |
SRP164885: RNA sequencing of the head and tail of planarian Schmidtea mediterranea during nr4A inhibition
Whitehead Institute for Biomedical Research
Design: 16 conditions
| Condition | num. replicates | Organism part | Timepoint | Treatment | Ploidy | Strain |
|---|---|---|---|---|---|---|
| head, 2 weeks | 3 | head | 2 weeks | 2N (non-dividing) | asexual CIW4 | |
| head, 2 weeks, nr4A | 3 | head | 2 weeks | nr4A | 2N (non-dividing) | asexual CIW4 |
| head, 3 weeks | 3 | head | 3 weeks | 2N (non-dividing) | asexual CIW4 | |
| head, 3 weeks, nr4A | 3 | head | 3 weeks | nr4A | 2N (non-dividing) | asexual CIW4 |
| head, 4 weeks | 3 | head | 4 weeks | 2N (non-dividing) | asexual CIW4 | |
| head, 4 weeks, nr4A | 3 | head | 4 weeks | nr4A | 2N (non-dividing) | asexual CIW4 |
| head, 5 weeks | 3 | head | 5 weeks | 2N (non-dividing) | asexual CIW4 | |
| head, 5 weeks, nr4A | 3 | head | 5 weeks | nr4A | 2N (non-dividing) | asexual CIW4 |
| tail, 2 weeks | 3 | tail | 2 weeks | 2N (non-dividing) | asexual CIW4 | |
| tail, 2 weeks, nr4A | 3 | tail | 2 weeks | nr4A | 2N (non-dividing) | asexual CIW4 |
| tail, 3 weeks | 3 | tail | 3 weeks | 2N (non-dividing) | asexual CIW4 | |
| tail, 3 weeks, nr4A | 3 | tail | 3 weeks | nr4A | 2N (non-dividing) | asexual CIW4 |
| tail, 4 weeks | 3 | tail | 4 weeks | 2N (non-dividing) | asexual CIW4 | |
| tail, 4 weeks, nr4A | 3 | tail | 4 weeks | nr4A | 2N (non-dividing) | asexual CIW4 |
| tail, 5 weeks | 3 | tail | 5 weeks | 2N (non-dividing) | asexual CIW4 | |
| tail, 5 weeks, nr4A | 3 | tail | 5 weeks | nr4A | 2N (non-dividing) | asexual CIW4 |
SRP167900: Planarians recruit piRNAs for mRNA turnover in adult stem cells
BIOmac Research Center, NW I, University of Bayreuth
Design: 8 conditions
| Condition | num. replicates | RNAi | Tissue | Strain |
|---|---|---|---|---|
| X1 cells | 3 | FACS-sorted neoblasts (X1 cells) | CIW4 | |
| X1 cells, smedwi-2 RNAi | 3 | Smedwi-2 RNAi | FACS-sorted neoblasts (X1 cells) | CIW4 |
| X1 cells, smedwi-3 RNAi | 3 | smedwi-3 RNAi | FACS-sorted neoblasts (X1 cells) | CIW4 |
| X1 cells, unc-22 RNAI | 6 | Unc-22 RNAi (control) | FACS-sorted neoblasts (X1 cells) | CIW4 |
| Xins cells, smedwi-2 RNAi | 3 | Smedwi-2 RNAi | FACS-sorted differentiated cells (Xins cells) | CIW4 |
| Xins cells, smedwi-3 RNAi | 3 | smedwi-3 RNAi | FACS-sorted differentiated cells (Xins cells) | CIW4 |
| Xins cells, unc-22 RNAi | 6 | Unc-22 RNAi (control) | FACS-sorted differentiated cells (Xins cells) | CIW4 |
| whole worm | 2 | whole worm | CIW4 |
SRP181555: Transcriptomic analysis of planarians under simulated microgravity and hypergravity
Universitat de Barcelona
Design: 8 conditions
| Condition | num. replicates | Regeneration days | Gravity | Developmental stage | Molecule | Organism part | Sex | Strain |
|---|---|---|---|---|---|---|---|---|
| hypergravity control, 12 days | 2 | 12 | hypergravity control | adult | polyA RNA | whole organism | asexual | asexual BCN-10 clonal line |
| hypergravity control, 5 days | 2 | 5 | hypergravity control | adult | polyA RNA | whole organism | asexual | asexual BCN-10 clonal line |
| hypergravity test, 12 days | 2 | 12 | hypergravity test | adult | polyA RNA | whole organism | asexual | asexual BCN-10 clonal line |
| hypergravity test, 5 days | 2 | 5 | hypergravity test | adult | polyA RNA | whole organism | asexual | asexual BCN-10 clonal line |
| microgravity control, 12 days | 2 | 12 | microgravity control | adult | polyA RNA | whole organism | asexual | asexual BCN-10 clonal line |
| microgravity control, 5 days | 2 | 5 | microgravity control | adult | polyA RNA | whole organism | asexual | asexual BCN-10 clonal line |
| microgravity test, 12 days | 2 | 12 | microgravity test | adult | polyA RNA | whole organism | asexual | asexual BCN-10 clonal line |
| microgravity test, 5 days | 2 | 5 | microgravity test | adult | polyA RNA | whole organism | asexual | asexual BCN-10 clonal line |
SRP214683: Tnfaip2/Exoc3 driven lipid metabolism is essential for stem cell differentiation & organ homeostasis [Schmidtea mediterranea]
Core Facility Life Science Computing, Leibniz Institute on Aging - Fritz Lipmann Institute
Design: 2 conditions
| Condition | num. replicates | Depletion | Cell cycle | Irradiation sensitivity | Source name |
|---|---|---|---|---|---|
| Smed-exoc3 | 3 | Smed-exoc3 | mitotically active | irradiation sensitive | X1 |
| gfp (control) | 3 | gfp (control) | mitotically active | irradiation sensitive | X1 |
SRP217572: Conserved targets of Wnt signaling in Schmidtea mediterranea and Hofstenia miamia
Whitehead Institute for Biomedical Research
Design: 17 conditions
| Condition | num. replicates | Irradiation | RNAi condition | Time | Organism part | Strain |
|---|---|---|---|---|---|---|
| bcat RNAi, day 1 | 1 | no | bcat RNAi | day 1 | tail | asexual CIW4 |
| bcat RNAi, day 2 | 1 | no | bcat RNAi | day 2 | tail | asexual CIW4 |
| bcat RNAi, day 4 | 2 | no | bcat RNAi | day 4 | tail | asexual CIW4 |
| bcat RNAi, day 4, irradiated | 1 | yes | bcat RNAi | day 4 | tail | asexual CIW4 |
| bcat RNAi, day 6 | 1 | no | bcat RNAi | day 6 | tail | asexual CIW4 |
| sp5 RNAi, 1 week | 1 | no | sp5 RNAi | 1 week | tail | asexual CIW4 |
| sp5 RNAi, 2 weeks | 1 | no | sp5 RNAi | 2 weeks | tail | asexual CIW4 |
| sp5 RNAi, 4 weeks | 1 | no | sp5 RNAi | 4 weeks | tail | asexual CIW4 |
| unc RNAi, 1 week | 1 | no | unc RNAi | 1 week | tail | asexual CIW4 |
| unc RNAi, 2 weeks | 1 | no | unc RNAi | 2 weeks | tail | asexual CIW4 |
| unc RNAi, 4 weeks | 1 | no | unc RNAi | 4 weeks | tail | asexual CIW4 |
| unc RNAi, day 0 | 1 | no | unc RNAi | day 0 | tail | asexual CIW4 |
| unc RNAi, day 1 | 1 | no | unc RNAi | day 1 | tail | asexual CIW4 |
| unc RNAi, day 2 | 1 | no | unc RNAi | day 2 | tail | asexual CIW4 |
| unc RNAi, day 4 | 2 | no | unc RNAi | day 4 | tail | asexual CIW4 |
| unc RNAi, day 4, irradiated | 1 | yes | unc RNAi | day 4 | tail | asexual CIW4 |
| unc RNAi, day 6 | 1 | no | unc RNAi | day 6 | tail | asexual CIW4 |
SRP255875: Gene expression profiling for: activin-2 is required for regeneration of polarity on the planarian anterior-posterior axis
MIT Biology, Whitehead Institute for Biomedical Research
Downloads
Design: 6 conditions
| Condition | num. replicates | RNAi | Wound orientation | Organism part | RNAi feedings | Strain |
|---|---|---|---|---|---|---|
| activin-2 RNAi | 6 | activin-2 | post pharyngeal fragment | 4F | CIW4 | |
| anterior-facing wound, activin-2 RNAi | 4 | activin-2 | anterior-facing wound | post pharyngeal fragment | 4F | CIW4 |
| anterior-facing wound, unc-22 RNAi | 4 | unc-22 | anterior-facing wound | post pharyngeal fragment | 4F | CIW4 |
| posterior-facing wound, activin-2 RNAi | 22 | activin-2 | posterior-facing wound | post pharyngeal fragment | 4F | CIW4 |
| posterior-facing wound, unc-22 RNAi | 21 | unc-22 | posterior-facing wound | post pharyngeal fragment | 4F | CIW4 |
| unc-22 RNAi | 6 | unc-22 | post pharyngeal fragment | 4F | CIW4 |
Other
These studies are available in ENA, and the reads successfully align to our genomes.
They have not been included in our analysis for one of the following reasons:
Failed to meet minimal criteria for differential expression analysis, failure to pass data quality filters, or we were unable to interpret accompanying metadata.
ERP000581: The head-regeneration transcriptome of the planarian Schmidtea mediterranea
High Throughput Sequencing Unit at the Genomics & Proteomics Core Facility, German Cancer Research Center (DKFZ), Germany
The head-regeneration transcriptome of the planarian Schmidtea mediterranea. (Sandmann .. Bartscherer, 2011)
E-MTAB-607 in ArrayExpress
7 runs in ENA
SRP006000: De novo assembly and validation of Planaria transcriptome by massive parallel sequencing and shotgun proteomics
Max Delbrueck Center for Molecular Medicine
6 runs in ENA
SRP026030: Schmidtea mediterranea Transcriptome or Gene expression
Max Planck Institute of Molecular Cell Biology and Genetics
Reactivating head regrowth in a regeneration-deficient planarian species. (Liu .. Rink, 2013)
8 runs in ENA
SRP028872: Schmidtea mediterranea S2F2 Genome sequencing
SRP028969: Schmidtea mediterranea CIW4 Transcriptome
SRP035509: Schmidtea mediterranea strain:CIW4 Transcriptome or Gene expression
San Diego State University
6 runs in ENA
SRP042226: Schmidtea mediterranea strain:clone 4Transcriptome or Gene expression
Whitehead Institute
1 run in ENA
SRP043140: Schmidtea mediteranea RNAi knockdown (ß-catenin, notum vs GFP)
Max Planck Institute for Molecular Biomedicine
6 runs in ENA
SRP043189: Schmidtea mediterranea Transcriptome Assembly
Max Planck Institute for Molecular Biomedicine
2 runs in ENA
SRP058017: A mex3 homolog is required for differentiation during planarian stem cell lineage development
Pearson, Molecular Genetics, Hospital for Sick Children
10 runs in ENA
SRP059140: Schmidtea mediterranea Raw sequence reads
The Whitehead Institute for Biomedical Research
719 runs in ENA
SRP065271: Single-muscle-cell transcriptome profiling along the planarian anteroposterior axis
Whitehead Institute for Biomedical Research
Two FGFRL-Wnt circuits organize the planarian anteroposterior axis. (Scimone .. Reddien, 2016)
354 runs in ENA
SRP066558: Conserved functional antagonism between CELF and MBNL proteins regulates stem cell-specific alternative splicing and regeneration in planarians (dataset 1)
Berlin Institute for Medical Systems Biology, Max Delbruck Centrum
11 runs in ENA
SRP070102: PolyA position Profiling (3P-Seq) in Schmidtea mediterranea
Institute for Stem cell biology and Regenerative medicine (inStem)
4 runs in ENA
SRP078739: Role of microRNA miR124c during planarian brain regeneration.
Institute for Stem cell biology and Regenerative medicine (inStem)
2 runs in ENA
SRP078776: Role of cytoplasmic poly (A) binding protein during planaria regeneration
Institute for Stem cell biology and Regenerative medicine (inStem)
4 runs in ENA
SRP083006: transcriptome of Smed-LPT RNAi
University of Oxford
4 runs in ENA
SRP093467: Planarian epidermal stem cells respond to positional cues to promote cell type diversity
The Whitehead Institute for Biomedical Research
14 runs in ENA
SRP095154: Gene expression profiles along the planarian A/P axis.
SRP100443: Smed-hippo(RNAi) RNA-Seq
Single Cell Genomics, Development, Centro Nacional de Análisis Genómico
18 runs in ENA
SRP102921: Schmidtea mediterranea strain:S2 Genome sequencing and assembly
Max Planck Institute of Molecular Cell Biology and Genetics
The genome of Schmidtea mediterranea and the evolution of core cellular mechanisms. (Grohme .. Rink, 2018)
Planmine
1 run in ENA
SRP109123: Schmidtea mediterranea cultivar:S2F2 Transcriptome or Gene expression
Stowers Institute for Medical Research
Synaptonemal complex extension from clustered telomeres mediates full-length chromosome pairing in Schmidtea mediterranea. (Xiang .. Hawley, 2014)
Schmidtea mediterranea Genome Database
15 runs in ENA
SRP113707: Schmidtea mediterranea sexual vs. asexual head sequence reads
Wright State University
6 runs in ENA
SRP121652: FOX and ETS family transcription factors regulate the pigment cell lineage in planarians
Pearson, Molecular Genetics, Hospital for Sick Children
5 runs in ENA
SRP126228: nhr1 RNAi
Sanchez Alvarado Lab, Stowers Institute for Medical Research
32 runs in ENA
SRP126427: Tetraspanin family member functionally resolves and facilitates the purification of adult pluripotent stem cells used for whole-body regeneration (Single)
Stowers Institute for Medical Research
318 runs in ENA
SRP158958: Transcriptional profiling of soxB1-2 RNAi planarians
San Diego State University
18 runs in ENA
SRP161555: Gene expression profiling of planarians after inhibition of hmcn-1
Whitehead Institute for Biomedical Research
6 runs in ENA
SRP168467: A FoxF-1 regulatory program controls specification of muscle subsets and phagocytic cells in planarians
The Whitehead Institute for Biomedical Research
101 runs in ENA
SRP213858: Transcriptome of cct3A(RNAi) planarians at 72 hours of regeneration
Leibniz Institute on Aging - Fritz Lipmann Institute (FLI)
6 runs in ENA
SRP214257: Transcriptional profile of planarian FACS populations at different nutritional status
Leibniz Institute on Aging - Fritz Lipmann Institute (FLI)
36 runs in ENA
SRP217326: Transcriptional profiling of laser captured intestinal tissue from the planarian Schmidtea mediterranea
SRP270347: RNA-Seq of adar1, adar2 and control RNAi worms (planarians)
Morgridge Institute for Research
20 runs in ENA
SRP272800: Mitochondrial state determines functionally divergent stem cell population in planaria
Institute for Stem cell science and Regenerative medicine (inStem)
12 runs in ENA
SRP285746: Canonical and early lineage-specific stem cell types identified in planarian SirNeoblasts
Westlake University
2 runs in ENA
SRP288179: The DEAD-box helicase DDX56 is a conserved stemness regulator in normal and cancer stem cells
Pearson, Molecular Genetics, Hospital for Sick Children
1 run in ENA
SRP303889: Schmidtea mediterranea 10X G1/G0 scRNA-seq
Whitehead Institute for Biomedical Research
Planarian stem cells specify fate yet retain potency during the cell cycle. (Raz .. Reddien, 2021)
1 run in ENA
SRP310765: Examination of gene expression in S. mediterranea transitioning from recirculation to static culture in the presence or absence of Gentamycin at 0, 1, 2, 3, or 4 days
Seidel, Genomics, Stowers Institute
36 runs in ENA
Release 18 - April 2023
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