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RNASeq Schistosoma japonicum

Schistosoma japonicum - public RNASeq studies

Analysed

SRP090154: Dynamic transcriptome surveys revealed that biogenic amines and insect-like hormonal regulation are involved in Schistosoma japonicum pairing and reproductive development

National Institute of Parasitic Diseases, Chinese Center for Disease Control and Prevention

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Design: 16 conditions

Condition num. replicates Age Organism part Sex Strain
14 days, female 3 14 days whole organism female Anhui
14 days, male 3 14 days whole organism male Anhui
16 days, female 3 16 days whole organism female Anhui
16 days, male 3 16 days whole organism male Anhui
18 days, female 3 18 days whole organism female Anhui
18 days, male 3 18 days whole organism male Anhui
20 days, female 3 20 days whole organism female Anhui
20 days, male 3 20 days whole organism male Anhui
22 days, female 3 22 days whole organism female Anhui
22 days, male 3 22 days whole organism male Anhui
24 days, female 3 24 days whole organism female Anhui
24 days, male 3 24 days whole organism male Anhui
26 days, female 3 26 days whole organism female Anhui
26 days, male 3 26 days whole organism male Anhui
28 days, female 3 28 days whole organism female Anhui
28 days, male 3 28 days whole organism male Anhui

SRP128030: Transcriptome analysis of females and males following knockdown serine/threonine protein phosphatase 1 catalytic subunit encoding genes(Sj-pp1c) in Schistosoma japonicum

State Key Laboratory of Agricultural Microbiology, College of Veterinary Medicine, Huazhong Agricultural University

Serine/threonine protein phosphatase 1 (PP1) controls growth and reproduction in Schistosoma japonicum. (Zhao .. Hu, 2018)

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Design: 4 conditions

Condition num. replicates Developmental stage Organism part Sex Strain background Treatment
female 3 21 days post infection whole organism female Jiangsu
female, Sj-pp1c knockdown 3 21 days post infection whole organism female Jiangsu Sj-pp1c knockdown
male 3 21 days post infection whole organism male Jiangsu
male, Sj-pp1c knockdown 3 21 days post infection whole organism male Jiangsu Sj-pp1c knockdown

SRP168979: Schistosoma japonicum Transcriptome or Gene expression

Shanghai veterinary research institute of Chinese academy of agricultural sciences

Comparative analysis of transcriptional profiles of Schistosoma japonicum adult worms derived from primary-infected and re-infected water buffaloes. (Mao .. Liu, 2019)

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Design: 2 conditions

Condition num. replicates Isolate Collection date Geographic location Host Organism part
Primary infection 3 Primary infection 26-Dec-17 China:jiangsu Water Buffalo adult worm
re-infection 3 re-infection 26-Dec-17 China:jiangsu Water Buffalo adult worm

Other

These studies are available in ENA, and the reads successfully align to our genomes.
They have not been included in our analysis for one of the following reasons:
Failed to meet minimal criteria for differential expression analysis, failure to pass data quality filters, or we were unable to interpret accompanying metadata.

ERP105127: Here we use subtractive RNASeq to characterise the genes encoding the principal secretory products of S. japonicum esophageal glands, preparatory to evaluating their relevance as targets of the self-cure process.

York

3 runs in ENA

SRP019769: Schistosoma japonicum Small RNA Transcriptome

Institute of Pathogen Biology, Chinese Academy of Medical Sciences

Profiles of small non-coding RNAs in Schistosoma japonicum during development. (Cai .. Chen, 2011)

1 run in ENA

SRP043313: Genome-wide transcriptome analysis revealed extensive alternative RNA splicing in gene expression in the zoonotic parasite Schistosoma japonicum

Laboratory of Parasitology, Institute of Pathogen Biology, Chinese Academy of Medical Sciences and Peking Union Medical College

Genome-wide transcriptome analysis shows extensive alternative RNA splicing in the zoonotic parasite Schistosoma japonicum. (Piao .. Chen, 2014)

2 runs in ENA

SRP061588: transcriptome of vertebrate stages of Schistosoma japonicum

Institute for Infectious Diseases and Vaccine Development

Transcriptome Bioinformatical Analysis of Vertebrate Stages of Schistosoma japonicum Reveals Alternative Splicing Events. (Wang .. Pan, 2015)

1 run in ENA

SRP179824: Genome sequencing of clonal Schistosoma japonicum

Fudan University

3 runs in ENA