Onchocerca volvulus - public RNASeq studies
Table of Contents
Analysed
ERP001350: Onchocerca volvulus transcriptomics
Wellcome Sanger Institute
Onchocerca volvulus is a filarial nematode parasite of humans, causing Onchocerciasis, or River Blindness, which affects over 37 million people, mainly in Africa. It is a severely debilitating disease, which is transmitted to humans by black fly. This project aims to undertake high-throughput sequencing of Onchocerca volvulus transcriptome for de novo assembly of transcripts. The main objective of this project is to recognize genes expressed in given life stages.
Design: 5 conditions
| Condition | num. replicates | Developmental stage | Organism part | Sex |
|---|---|---|---|---|
| Adult female | 3 | adult | whole organism | female |
| Adult male | 1 | adult | whole organism | male |
| L2 | 1 | L2 | whole organism | |
| L3 | 3 | L3 | whole organism | |
| Microfilariae | 2 | microfilariae | whole organism |
Other
These studies are available in ENA, and the reads successfully align to our genomes.
They have not been included in our analysis for one of the following reasons:
Failed to meet minimal criteria for differential expression analysis, failure to pass data quality filters, or we were unable to interpret accompanying metadata.
SRP056861: Onchocerca volvulus Genome sequencing
The Genome Institute
9 runs in ENA
.
