Hymenolepis microstoma - public RNASeq studies
Table of Contents
Analysed
ERP004459: Analysis of RNA expression in tapeworm species
Wellcome Sanger Institute
Project to investigate gene and small RNA expression of tapeworms (including Echinococcus multilocularis, E. granulosus, Hymenolepis microstoma).
Genome-wide transcriptome profiling and spatial expression analyses identify signals and switches of development in tapeworms. (Olson .. Berriman, 2018)
Design: 5 conditions
| Condition | num. replicates | Developmental stage | Organism part | Strain |
|---|---|---|---|---|
| Adult, mid-section | 3 | adult | mid strobila region | Nottingham |
| Adult, posterior | 3 | adult | posterior strobila region | Nottingham |
| Adult, scolex | 3 | adult | neck/scolex region | Nottingham |
| Adult, whole | 3 | adult | whole organism | Nottingham |
| mid-metamorphosis larvae | 3 | larva | whole organism | Nottingham |
Other
These studies are available in ENA, and the reads successfully align to our genomes.
They have not been included in our analysis for one of the following reasons:
Failed to meet minimal criteria for differential expression analysis, failure to pass data quality filters, or we were unable to interpret accompanying metadata.
ERP001238: Transcriptome sequencing of Hymenolepis microstoma a classic laboratory model in cestodology
Wellcome Sanger Institute
2 runs in ENA
Release 18 - April 2023
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