Echinococcus granulosus - public RNASeq studies
Table of Contents
Analysed
ERP004459: Analysis of RNA expression in tapeworm species
Wellcome Sanger Institute
Project to investigate gene and small RNA expression of tapeworms (including Echinococcus multilocularis, E. granulosus, Hymenolepis microstoma).
Design: 2 conditions
| Condition | num. replicates | Developmental stage | Organism part | Strain |
|---|---|---|---|---|
| Metacestode, cyst wall | 1 | metacestode | cyst wall | G7 |
| Non-activated protoscolex | 3 | Non-activated protoscolex | G7 |
Other
These studies are available in ENA, and the reads successfully align to our genomes.
They have not been included in our analysis for one of the following reasons:
Failed to meet minimal criteria for differential expression analysis, failure to pass data quality filters, or we were unable to interpret accompanying metadata.
ERP001209: Cestode transcriptomics
Wellcome Sanger Institute
The main objective of this project is to recognize genes expressed in the life stages and tissue types of a variety of different cestode species, including Echinococcus multilocularis, E. granulosus, Hymenolepis microstoma, H. nana and others.
1 run in ENA
SRP044131: Transcriptome analysis of mRNA and microRNA in the cestodes Echinococcus granulosus and Echinococcus multilocularis
HASH(0x7aced00) (Liu .. Chen, 2017)
2 runs in ENA
SRP131874: Echinococcus granulosus strain:G1 Raw sequence reads
LNCC
4 runs in ENA
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