Dirofilaria immitis - public RNASeq studies
Table of Contents
Analysed
SRP057178: Tissue-Specific Transcriptomics and Proteomics of a Filarial Nematode and its Wolbachia Endosymbiont
New England Biolabs
Design: 4 conditions
| Condition | num. replicates | Developmental stage | Endosymbiont | Organism part | Sex | Strain |
|---|---|---|---|---|---|---|
| body wall | 2 | adult | Wolbachia | body wall | female | TRS |
| head | 2 | adult | Wolbachia | head | female | TRS |
| intestine | 2 | adult | Wolbachia | intestine | female | TRS |
| uterus | 2 | adult | Wolbachia | uterus | female | TRS |
Other
These studies are available in ENA, and the reads successfully align to our genomes.
They have not been included in our analysis for one of the following reasons:
Failed to meet minimal criteria for differential expression analysis, failure to pass data quality filters, or we were unable to interpret accompanying metadata.
SRP010089: Dirofilaria immitis Transcriptome or Gene expression
Department of Parasitology, Sichuan Agricultural University
Novel insights into the transcriptome of Dirofilaria immitis. (Fu .. Yang, 2012)
1 run in ENA
SRP010846: MicroRNA discovery and analysis of Dirofilaria immitis by deep sequencing.
Department of Parasitology, Sichuan Agricultural University
Identification of Dirofilaria immitis miRNA using illumina deep sequencing. (Fu .. Yang, 2013)
1 run in ENA
SRP048819: Dirofilaria immitis Transcriptome or Gene expression
New England Biolabs
3 runs in ENA
Release 18 - April 2023
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