Caenorhabditis nigoni - public RNASeq studies
Table of Contents
Analysed
SRP067756: Analysis of Hybrid Incompatability between C nigoni and C briggsae by mRNA sequencing
Hong Kong Baptist University
Design: 3 conditions
| Condition | num. replicates | Developmental stage | Genotype | Phenotype | Strain |
|---|---|---|---|---|---|
| C.briggsae mutant 1 | 3 | young adult male | Mostly C. nigoni genome, with X chromosome syntenic region replaced by C. briggsae X chromosome (from 16.4 M to the end) | sterile | ZZY10330 |
| C.briggsae mutant 2 | 3 | young adult male | Mostly C. nigoni genome, with X chromosome syntenic region replaced by C. briggsae chromosome X (from 4.5M to 12.2M) | sterile | ZZY10307 |
| wild type | 3 | young adult male | wild type C. nigoni | fertile | JU1421 |
SRP120629: Caenorhabditis nigoni male and female transcriptomes
Cornell University
Design: 2 conditions
| Condition | num. replicates | Biomaterial provider | Breed | Description title | Developmental stage | Organism part | Sample name | Sex |
|---|---|---|---|---|---|---|---|---|
| C. nigoni adult females | 12 | Asher Cutter | JU1421 | Caenorhabditis nigoni adult females | adult | whole organism | C. nigoni adult females | female |
| C. nigoni adult males | 12 | Asher Cutter | JU1421 | Caenorhabditis nigoni adult males | adult | whole organism | C. nigoni adult males | male |
Other
These studies are available in ENA, and the reads successfully align to our genomes.
They have not been included in our analysis for one of the following reasons:
Failed to meet minimal criteria for differential expression analysis, failure to pass data quality filters, or we were unable to interpret accompanying metadata.
SRP067543: Analysis of Hybrid Incompatability between C nigoni and C briggsae by mRNA sequencing
Hong Kong Baptist University
1 run in ENA
Release 18 - April 2023
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