Caenorhabditis elegans - public RNASeq studies
Table of Contents
Analysed
Other
These studies are available in ENA, and the reads successfully align to our genomes.
If you would like some of them included in the analysis, please let us know!
DRP000898: mRNAseq for the unc-75 mutant
Gene Expression, Medical Research Institute, Tokyo Medical and Dental University
0 runs in ENA
DRP002871: mRNA-seq of N2 and smg-2 to identify NMD isoforms
TOKYO_MEDEN
0 runs in ENA
DRP004388: Transcriptome analysis between wild-type and endu-2 mutant
KONAN
0 runs in ENA
DRP004938: Determination of nutrient-responsive genes in C. elegans
UT_GSPS
0 runs in ENA
DRP004944: Cellular fractionation and RNAseq for the unc-75 mutant
TOKYO_MEDEN
0 runs in ENA
DRP004945: Cellular fractionation and RNAseq for the lst-3 mutant
TOKYO_MEDEN
0 runs in ENA
DRP004947: Cellular fractionation and RNAseq for the wild-type strain
TOKYO_MEDEN
0 runs in ENA
ERP003471: RNA-seq transcript assembly evaluation
European Molecular Biology Laboratory
To assess the performance of computational methods for exon identification, transcript reconstruction and expression level quantification from RNA-seq data, 24 protocol variants of 14 independent software programs (AUGUSTUS, Cufflinks, Exonerate, GSTRUCT, iReckon, mGene, mTim, NextGeneid, Oases, SLIDE, Transomics, Trembly, Tromer and Velvet) were evaluated against transcriptome data from human cells and two model organisms.
E-MTAB-1730 in ArrayExpress
0 runs in ENA
ERP010876: MML-1/Mondo complexes regulate HLH-30/TFEB via TOR inhibition to promote longevity in response to signals from the reproductive system
Max Planck Institute for Biology of Ageing
Comprehensive transcriptome analysis of hlh-30, mml-1 and mxl-2 in N2 (wildtype) and glp-1 background.
E-MTAB-3686 in ArrayExpress
0 runs in ENA
ERP013714: Functional sequestration of MOAG-2/LIR-3 by polyglutamine expansion proteins
European Research Institute for the Biology of Ageing (ERIBA), University of Groningen, UMC Groningen
Transcriptome profiling of Lir3 C.elegans mutants. Larval stage L4 worms were used for RNA isolation from N2 (Bristol), Q40 (polyglutamine model) genetic background; Lir3 and wiltype controls. Experiments were done in triplicates using ribosomal RNA depletion. Libraries were sequenced with 50bp reads on Illumina HiSeq2500 platform
E-MTAB-4172 in ArrayExpress
0 runs in ENA
ERP014488: Differential gene analysis to identify genes expressed in AMsh glia and genes that are pros-1-dependent in C. elegans
THE ROCKEFELLER UNIVERSITY
AMsh glia were isolated from C. elegans L4 larvae by FACS, based on expression of a dsRed marker under control of the AMsh glia-specific marker F16F9.3. From control animals, dsRed-positive and dsRed-negative samples were compared to identify AMsh glia-enriched genes. To identify glial targets of the transcription factor pros-1/Prospero, dsRed-positive samples from control and pros-1(RNAi) animals were compared.
0 runs in ENA
ERP015607: RNA-seq analysis of C. elegans CPEB homolog mutants.
Institute of Molecular Life Sciences, University of Zurich
Comparative transcriptomics study between C. elegans wild-type N2 and CPEB homolog mutants: fog-1, cpb-2, and cpb-3.
E-MTAB-4720 in ArrayExpress
0 runs in ENA
ERP016265: Splicing factor 1 modulates dietary restriction and TORC1 pathway longevity in C. elegans
Department of Biochemistry and Molecular Biology University of Southern Denmark
RNA-seq of C.elegans strain N2 (wt) with and without sfa-1 RNAi at adult day 3 and day 15, C. elegans strain DA1116 (eat-2(ad1116)) with and without sfa-1 RNAi at adult day 3, day 15, and day 27, C. elegans strain SS104 (glp-4(bn2)) with and without hrp-2 RNAi at adult day 1, and HeLa cells with and without SF1 siRNA.
E-MTAB-4866 in ArrayExpress
0 runs in ENA
ERP016404: RNA-Seq of Caenorhabditis elegans Mi2-depleted embryos at 24- and 100-cell stages
University of Fribourg Biology department Zoology institute
We aimed at identifying the transcriptomes of single and double mutants of the two C.elegans Mi2 homologues, let-418 and chd-3. Embryos depleted for one or both genes were manually sorted and synchronised at the 24- and 100-cell stages, and their transcriptome compared to control embryos in order to identify de-regulated target genes, and determine whether the two Mi2 proteins are functionally redundant.
E-MTAB-4714 in ArrayExpress
0 runs in ENA
ERP016462: Small RNA and total RNA sequencing of C. elegans with mutations in the hrde-1 and emb-4 genes
ERP016513: Analysis of post-transcriptional RNA modifications in Caenorhabditis elegans under stress
Gurdon Institute
Syncronised population of L1 animals were grown until young adult stage. For heat stress, animals were heat-shocked at 37℃ for 4hrs with food. For starvation experiments, young adult stage animals were plated on either food plates for control or on empty plates for starvation at 20℃ for 4hrs.
E-MTAB-4940 in ArrayExpress
0 runs in ENA
ERP110557: RNA-seq of total and polysomal RNA of clk-1(qm30) mutants in Caenorhabditis elegans
KU Leuven, Centre of Microbial and Plant Genetics (CMPG)
This study uses total and polysomal RNA-sequencing to show that the translational efficiencies of specific mRNAs change depending on the mitochondrial activity in longer-lived C. elegans.
E-MTAB-7166 in ArrayExpress
0 runs in ENA
ERP111311: RNAseq of C. elegans cultured on metformin sensitive and resistant E. coli strains with and without 50mM metformin treatment
ERP111974: RNA-seq analysis of C. elegans mina-1 mutants
University Children’s Hospital Basel, University of Basel, Spitalstrasse 33, 4056 Basel, Switzerland
Comparative transcriptomics study between C. elegans wild-type N2 and mina-1 mutants.
E-MTAB-7389 in ArrayExpress
0 runs in ENA
ERP112306: CLIP-seq analysis of C.elegans MINA-1::GFP transgenic animals.
Institute of Pharmaceutical Sciences, ETH Zurich
Analysis to determine which mRNAs are specifically associated with MINA-1 protein.
E-MTAB-7420 in ArrayExpress
0 runs in ENA
ERP113650: Differential gene analysis to identify genes expressed in CEPsh glia of C. elegans
THE ROCKEFELLER UNIVERSITY
CEPsh glia were isolated from C. elegans mix larvae population by FACS, based on expression of a GFP marker under control of the CEPsh glia-specific marker hlh-17. All other cells, which are not expressing GFP, were collected separately for control. RNA reads from GFP-positive and GFP-negative samples were compared to identify CEPsh glia-enriched genes.
0 runs in ENA
ERP115535: dsRNA uptake in Caenorhabditis elegans
GURDON INSTITUTE
long RNA sequencing and primary and secondary small RNA sequencing of Caenorhabditis wild type and dsRNA uptake mutants
0 runs in ENA
ERP115742: RNA-seq of C. elegans adults and embryos exposed to P. vranovensis, P. aeruginosa, P. luminescens or wdr-23 mutant embryos.
Centre for Trophoblast Research
0 runs in ENA
ERP116498: RNAseq of young adult C. elegans animals fed on three different bacterial diets, E. coli OP50, B. subtilis PXN21 and a mixture of both
School of Biological Sciences, University of Edinburgh
To uncover the host response pathways that are modified by a B. subtilis diet and that may provide the protective effect against α-synuclein aggregation, we performed comparative global transcriptomics analysis using next generation RNA sequencing (RNA-seq). We compared young adult animals fed on three different diets, E. coli OP50 and B. subtilis PXN21 lawns, consisting of both spores and vegetative cells, and a mixture of both bacteria.
E-MTAB-8164 in ArrayExpress
0 runs in ENA
ERP116885: RNA-seq of C. Elegans control vs SKN-1b mutant
University of Kent
The difference in translation between CGCM and SKN-1b mutant
E-MTAB-8253 in ArrayExpress
0 runs in ENA
ERP117708: In vivo assessment of ROS production and oxidative stress effects induced by chronic exposure to gamma radiation in C. elegans
Centre for Integrative Genetics (CIGENE), Faculty of Biosciences (BIOVIT), Norwegian University of Life Sciences (NMBU), 1432, As, Norway
0 runs in ENA
ERP119575: Transcriptomic effect of extracellular protein aggregation regulators in C. elegans
MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY
0 runs in ENA
ERP125163: The divergent nodes of non-autonomous UPRER signaling through serotonergic and dopaminergic neurons
UNIVERSITY OF CALIFORNIA BERKELEY
Performed RNA-seq analysis of animals with xbp-1s overexpression (ER stress response transcription factor) in specific neuron types: pan-neuronal, serotonergic neuron, dopaminergic neuron, and both serotonergic and dopaminergic neurons, all compared to a wild-type control. RNA-seq was performed on purified RNA extracted from ~1000 whole worms using a proprietary Genewiz protocol described briefly in the manuscript. 3 biological replicates are provided for each sample.
E-MTAB-9771 in ArrayExpress
0 runs in ENA
ERP125278: Tissue-specific transcriptome profiling of Protein Aggregation in Caenorhabditis elegans
MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY
The goal of this study is to identifiy factors, which modulate protein aggregation in a tissue-specific manner. To this end, we sequenced the transcriptomes of multiple C. elegans lines.
0 runs in ENA
SRP000244: Whole-genome sequencing and variant discovery in Caenorhabditis elegans by Illumina sequencing
The Genome Institute at Washington University
Whole-genome sequencing and variant discovery in C. elegans. (Hillier .. Mardis, 2008)
Genome: Caenorhabditis elegans
0 runs in ENA
SRP000401: Deep sequencing of the Caenorhabditis elegans transcriptome using RNA isolated from various developmental stages under various experimental conditions RW0001
modENCODE
The goal of this study, started as a part of the modENCODE project, is to detect and characterize previously unannotated transcripts of the C. elegans genome.
Massively parallel sequencing of the polyadenylated transcriptome of C. elegans. (Hillier .. Waterston, 2009)
0 runs in ENA
SRP001010: A high resolution transcriptome map for both wild-type and NMD defective C. elegans
University of Toronto
0 runs in ENA
SRP001363: Illumina sequencing of small RNAs from C. elegans embryos
Rajewsky, Systems Biology of Gene Regulatory Elements, Max-Delbrueck Centrum Berlin-Buch
0 runs in ENA
SRP001455: C. elegans small RNAs
European Research Institute for the Biology of Ageing, University Medical Center Groningen
0 runs in ENA
SRP002007: Sequential rounds of RNA-dependent RNA transcription drive endogenous small-RNA biogenesis in ERGO-1/Argonaute pathway
Craig Mello, Program in Molecular Medicine, University of Massachusetts Medical School
0 runs in ENA
SRP002056: High throughput sequencing of endogenous small RNAs from AGO pathway mutants
Craig Mello, Program in Molecular Medicine, University of Massachusetts Medical School
0 runs in ENA
SRP003492: Caenorhabditis angaria genome sequencing project
Cal. Inst. of Tech., Division of Biology
Scaffolding a Caenorhabditis nematode genome with RNA-seq. (Mortazavi .. Sternberg, 2010)
0 runs in ENA
SRP003783: Multimodal RNA-seq using single-strand, double-strand, and circligase-based capture yields a refined and extended description of the C. elegans transcriptome
Fire Lab, Pathology, Stanford University School of Medicine
Multimodal RNA-seq using single-strand, double-strand, and CircLigase-based capture yields a refined and extended description of the C. elegans transcriptome. (Lamm .. Fire, 2011)
Co-option of the piRNA pathway for germline-specific alternative splicing of C. elegans TOR. (Barberán-Soler .. Valcárcel, 2014)
0 runs in ENA
SRP003896: Formation, regulation and evolution of 3'' UTRs in Caenorhabditis elegans
WIBR/MIT/HHMI
Formation, regulation and evolution of Caenorhabditis elegans 3'UTRs. (Jan .. Bartel, 2011)
0 runs in ENA
SRP004901: mut-16 and other mutator-class genes modulate 22G and 26G siRNA pathways in Caenorhabditis elegans
Ruvkun, Molecular Biology, Massachusetts General Hospital
0 runs in ENA
SRP005427: GSE26795: Encyclopedia of C. elegans 3' UTRs and their regulatory elements - 454 sequencing of RACE clones
modENCODE DCC
0 runs in ENA
SRP005562: mRNA sequencing from ego-1(om84) and control L3, L4, and adult C. elegans hermaphrodites
Fire, Genetics, Stanford University
0 runs in ENA
SRP008241: Analysis of Caenorhabditis elegans intestinal gene expression and alternative polyadenylation using fluorescence-activated nuclei sorting (FANS) and 3' end deep sequencing (3'end-seq)
Northwestern University
0 runs in ENA
SRP009134: sRNA profiles of control adults, postdauer adults, larva L3, and dauer stages of C. elegans
Biochemistry, Boston University School of Medicine
RNAi pathways contribute to developmental history-dependent phenotypic plasticity in C. elegans. (Hall .. Sengupta, 2013)
Developmental programming modulates olfactory behavior in C. elegans via endogenous RNAi pathways. (Sims .. Hall, 2016)
0 runs in ENA
SRP009152: Transgenerational inheritance of an acquired small RNA-based antiviral response in C.elegans
Oliver Hobert, Biochemistry, Columbia University
0 runs in ENA
SRP009256: In vivo and transcriptome-wide identification of RNA-binding protein target sites [PAR-CLIP]
Max-Delbrueck-Center
0 runs in ENA
SRP009274: In vivo and transcriptome-wide identification of RNA-binding protein target sites [RNA-Seq]
Max-Delbrueck-Center
0 runs in ENA
SRP010055: Amplification of siRNA in Caenorhabditis elegans generates a transgenerational sequence-targeted histone H3 lysine 9 methylation footprint
Sam Gu, Molecular Biology and Biochemistry, Rutgers University
0 runs in ENA
SRP010374: Wobble Base-pairing Slows in vivo Translation Elongation in Metazoans
Stanford University
Wobble base-pairing slows in vivo translation elongation in metazoans. (Stadler .. Fire, 2011)
19 runs in ENA
SRP010646: Caenorhabditis elegans strain:N2, adr-1, adr-2, adr-1;adr-2 Transcriptome or Gene expression
Stanford University
Competition between ADAR and RNAi pathways for an extensive class of RNA targets. (Wu .. Fire, 2011)
0 runs in ENA
SRP011038: Impaired Insulin-/IGF1-Signaling Extends Life Span by Promoting Mitochondrial L-Proline Catabolism to Induce a Transient ROS-Signal
Leibniz Institute for Age Research - Fritz Lipmann Institute
0 runs in ENA
SRP012065: Identification of intermediate-sized non-coding RNAs involved in the UV-induced DNA damage response in C. elegans
CAS Key Laboratory of RNA Biology, Institute of Biophysics, Chinsese Academy of Sciences
0 runs in ENA
SRP012103: The Caenorhabditis elegans RDE-10/RDE-11 complex regulates RNAi by promoting secondary siRNA amplification
Ruvkun, Molecular Biology, Massachusetts General Hospital
0 runs in ENA
SRP012265: Small-RNAs in L4 and young adult stages
Bartel lab, Whitehead Institute
Long noncoding RNAs in C. elegans. (Nam .. Bartel, 2012)
0 runs in ENA
SRP013749: C. elegans piRNAs mediate the genome-wide surveillance of germline transcripts
Craig Mello, Program in Molecular Medicine, University of Massachusetts Medical School
C. elegans piRNAs mediate the genome-wide surveillance of germline transcripts. (Lee .. Mello, 2012)
0 runs in ENA
SRP013750: piRNAs initiate an epigenetic memory of non-self RNA in the C. elegans germline.
Craig Mello, Program in Molecular Medicine, University of Massachusetts Medical School
piRNAs initiate an epigenetic memory of nonself RNA in the C. elegans germline. (Shirayama .. Mello, 2012)
A Sex Chromosome piRNA Promotes Robust Dosage Compensation and Sex Determination in C. elegans. (Tang .. Mello, 2018)
0 runs in ENA
SRP013828: piRNAs can trigger a multigenerational epigenetic memory in the germline of C. elegans
Genentech, Inc.
0 runs in ENA
SRP014427: Caenorhabditis elegans ribosome profiling of miRNA targets
Stanford University
0 runs in ENA
SRP014544: RNA-seq quantification of expression changes upon unc-62 knockdown in adult Caenorhabditis elegans.
Stuart Kim, Developmental Biology, Stanford University
0 runs in ENA
SRP014581: Caenorhabditis elegans sperm mRNAome sequencing
Institute of Biophysics
0 runs in ENA
SRP014672: CEL-Seq transcriptomic analysis of C. elegans blastomeres
SRP014826: C. elegans piRNAs are processed from capped-small RNAs transcribed at promoters throughout the genome
Craig Mello, Program in Molecular Medicine, University of Massachusetts Medical School
0 runs in ENA
SRP015315: Transgenerational profiling of small non-coding RNAs in C.elegans RSD mutants
Miska, Wellcome Trust/Cancer Research UK Gurdon Institute, The Henry We, University of Cambridge
0 runs in ENA
SRP015332: Multiple insert size paired-end sequencing for deconvolution of complex transcriptomes
Raetsch Lab, Computational Biology, Memorial Sloan Kettering Cancer Center
0 runs in ENA
SRP015688: C. elegans linker cell transcriptome
California Institute of Technology
21 runs in ENA
SRP015836: Changes in small RNAs upon Viral infection of C.elegans
Miska, Wellcome Trust/Cancer Research UK Gurdon Institute, The Henry We, University of Cambridge
0 runs in ENA
SRP015918: Influence of p38 MAPK (PMK-1) on the heat stress response of C. elegans
Paul, Institut für Zoophysiologie, Westfälische Wilhelms-Universität Münster
0 runs in ENA
SRP016006: Caenorhabditis sex-specific RNAseq
Haag Lab, Department of Biology, University of Maryland
0 runs in ENA
SRP016022: microRNAs in C. elegans, P. pacificus, and S. ratti: Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
SRP016525: Analysis of small RNA response to viral infection in C.elegans
Miska, Wellcome Trust/Cancer Research UK Gurdon Institute, The Henry We, University of Cambridge
0 runs in ENA
SRP017438: Integral nuclear pore proteins bind to Pol III genes and are required for Pol III transcript processing in C. elegans [seq]
Ikegami Lab, Pediatrics, University of Chicago
0 runs in ENA
SRP017486: The landscape of RNA polymerase II transcription initiation in C. elegans reveals a novel regulatory architecture
WT/CRUK Gurdon Institute, University of Cambridge
0 runs in ENA
SRP017621: Using RNA-seq to identify transcriptional targets of MAB-5 in C. elegans
University of Kansas
26 runs in ENA
SRP017908: DAF-16/FOXO uses SWI/SNF to regulate transcription.
Massachusetts General Hospital
0 runs in ENA
SRP018033: NO-mediated transcriptional response in C. elegans
Biochemistry, NYU School of Medicine
Bacterial nitric oxide extends the lifespan of C. elegans. (Gusarov .. Nudler, 2013)
0 runs in ENA
SRP018765: Degradome sequencing reveals an endogenous microRNA target in C. elegans
Seoul National University
Degradome sequencing reveals an endogenous microRNA target in C. elegans. (Park .. Shin, 2013)
0 runs in ENA
SRP018867: Next generation sequencing facilitates quantitative analysis of Caenorhabditis elegans N2 wild type, emr-1(gk119), lem-2(tm1582) and emr-1(RNAi) lem-2(tm1582) transcriptomes.
Centro Andaluz de Biología del Desarrollo
0 runs in ENA
SRP020357: Genome-wide distribution of the three condensin complexes in C. elegans
Biology, New York University
Genome-wide analysis of condensin binding in Caenorhabditis elegans. (Kranz .. Ercan, 2013)
0 runs in ENA
SRP021083: Deep sequencing of endogenous mRNA from Caenorhabditis elegans in the presence and absence of rotenone at 4 different time points
Leibniz Institute for Age Research - Fritz Lipmann Institute
0 runs in ENA
SRP021462: Deep sequencing of endogenous mRNA from Caenorhabditis elegans in the presence and absence of arsenite
Leibniz Institute for Age Research - Fritz Lipmann Institute
0 runs in ENA
SRP021487: Deep sequencing of endogenous mRNA from Caenorhabditis elegans in the presence of 2-deoxy-D-glucose (DOG) at 4 different time points
Leibniz Institute for Age Research - Fritz Lipmann Institute
0 runs in ENA
SRP022188: microRNA decay analysis in the first larval stage Caenorhabditis elegans
SRP023261: Caenorhabditis elegans Transcriptome or Gene expression
The Genome Institute
0 runs in ENA
SRP023543: Caenorhabditis elegans strain:N2 Transcriptome or Gene expression
institute of biophysics
0 runs in ENA
SRP026198: mRNA and Ribosome Profiling in Four Nematode Species Traversing a Shared Developmental Transition
Fire, Pathology, Stanford University
0 runs in ENA
SRP027592: Dampening of expression oscillations by synchronous regulation of a microRNA and its target
Max Planck Institute of Immunobiology and Epigenetics
0 runs in ENA
SRP028269: Small RNA sequencing study of C elegans piRNA biogenesis factors
MRC Clinical Sciences Centre, Imperial College London
0 runs in ENA
SRP028602: Deep sequencing of endogenous mRNA from Caenorhabditis elegans in the presence and absence of 1-methylnicotinamide (MNA) and nicotinic acid (NA)
Core Facility - DNA Sequencing, Leibniz Institute on Aging - FLI
0 runs in ENA
SRP028611: Argonautes promote male fertility and provide a paternal memory of germline gene expression in C. elegans
Craig Mello, Program in Molecular Medicine, University of Massachusetts Medical School
0 runs in ENA
SRP028863: Profiling of RNA editing in Caenorhabditis elegans
Center of Bioinformatics, Peking University
0 runs in ENA
SRP028875: Global effects of the CSR-1 RNA interference pathway on transcriptional landscape
Alla Grishok, Biochemistry and Molecular Biophysics, Columbia University
0 runs in ENA
SRP029448: Spatiotemporal embryonic transcriptomics reveals the evolutionary history of the endoderm germ layer
Yanai, Biology, Technion - Israel Institute of Technology
169 runs in ENA
SRP030526: Caenorhabditis elegans Transcriptome or Gene expression
Indiana University
Large-scale detection of in vivo transcription errors. (Gout .. Lynch, 2013)
0 runs in ENA
SRP031831: The dsRBP and inactive editor, ADR-1, utilizes dsRNA binding to regulate A-to-I RNA editing across the C. elegans transcriptome
Yeo Lab, SCRM 3115, Bioinformatics, UCSD
0 runs in ENA
SRP033410: Extensive oscillatory gene expression during C. elegans larval development [RNA-seq for polyA enriched mRNAs]
Friedrich Miescher Institute
0 runs in ENA
SRP033412: Developmental Timecourses total-RNA sequencing [Ribosome repleted total RNA]
Friedrich Miescher Institute
0 runs in ENA
SRP034522: Conservation of mRNA and protein expression during development of C. elegans
Max Planck Institute of Immunobiology and Epigenetics
0 runs in ENA
SRP034589: The C. elegans SNAP complex component SNPC-4 coats piRNA domains and globally affects piRNA abundance
Reinke lab, Genetics, Yale University School of Medicine
0 runs in ENA
SRP034667: Male and Female DNA and RNA sequencing in several nematode species
Ercan, Biology, New York University
0 runs in ENA
SRP035281: A Genome-wide RNAi screen identifies factors required for distinct stages of C. elegans piRNA biogenesis
Sho Goh Laboratory, Genome Institute of Singapore
0 runs in ENA
SRP035359: Competence for reprogramming sex
Kimble, Biochemistry, UW-Madison
0 runs in ENA
SRP035507: Caenorhabditis elegans transcriptome, in response to albendazole
SRP036048: mRNAs that co-purify with OMA-1 in the C. elegans germline (sequencing)
Greenstein, Genetics, Cell Biology, and Development, University of Minnesota
0 runs in ENA
SRP037555: RNA-seq of C.elegans and M.musculus in the presence and absence of D-Glucosamine (GlcN)
Core Facility - DNA Sequencing, Leibniz Institute on Aging - FLI
0 runs in ENA
SRP038704: RNA-seq analysis of WT and blmp-1(tm548) mutant L3 larvae
Max Planck Institute for Biology of Ageing
0 runs in ENA
SRP038903: Caenorhabditis elegans ALA neuron transcriptome (wild-type, mid-L4 larval stage)
Cornell University
0 runs in ENA
SRP038920: Transcriptome wide identification of Dicer binding in human and C. elegans reveals a variety of substrates (CEL PAR-CLIP)
Rajewsky lab, Systems Biology of Gene Regulatory Elements, Max Delbrueck Center for Molecular Medicine
A variety of dicer substrates in human and C. elegans. (Rybak-Wolf .. Rajewsky, 2014)
0 runs in ENA
SRP038923: Transcriptome wide identification of Dicer binding in human and C. elegans reveals a variety of substrates (CEL RNA-Seq)
Rajewsky lab, Systems Biology of Gene Regulatory Elements, Max Delbrueck Center for Molecular Medicine
A variety of dicer substrates in human and C. elegans. (Rybak-Wolf .. Rajewsky, 2014)
0 runs in ENA
SRP040269: mRNA profile in DR-related mutants
Max Planck Institute for Biology of Ageing
0 runs in ENA
SRP040587: Unambiguous Identification of miRNA:target site Interactions by Different Types of Ligation Reactions
Systems Biology of Gene Regulatory Elements, Berlin Institute for Medical Systems Biology, Max Delbrück Center for Molecular Medicine
0 runs in ENA
SRP040623: The expression mRNAs after prg-1 mutation
Key Laboratory of the Zoological Systematics and Evolution, Institute of Zoology, Chinese Academy of Sciences
The influences of PRG-1 on the expression of small RNAs and mRNAs. (Wang .. Huang, 2014)
0 runs in ENA
SRP041095: Caenorhabditis elegans Transcriptome or Gene expression
SRP041461: A new dataset of spermatogenic vs oogenic transcriptomes in the nematode C. elegans
Kimble Lab, Biochemistry, University of Wisconsin-Madison
0 runs in ENA
SRP041708: Paternal RNA contributions in the C. elegans zygote
Max Planck Institute of Immunobiology and Epigenetics
Paternal RNA contributions in the Caenorhabditis elegans zygote. (Stoeckius .. Rajewsky, 2014)
0 runs in ENA
SRP042044: Innate host defense requires TFEB-mediated transcription of cytoprotective and antimicrobial genes
Laboratory of Comparative Immunology, Center for the Study of Inflammatory Bowel Disease, Massachusetts General Hospital, Harvard Medical School
0 runs in ENA
SRP042338: Endogenous germline nuclear RNAi-mediated transcriptional silencing and histone H3 lysine 9 methylation in defined regions of the Caenorhabditis elegans genome
Molecular Biology and Biochemistry, Rutgers University
0 runs in ENA
SRP042619: Global characterization of the oocyte-to-embryo transition in C. elegans uncovers a novel mRNA turnover mechanism
Max Planck Institute of Immunobiology and Epigenetics
0 runs in ENA
SRP043683: Neuronal CRTC-1 governs systemic mitochondrial metabolism and lifespan via a catecholamine signal
Computational Medicine & Bioinformatics, University of Michigan
0 runs in ENA
SRP043990: The cytoplasmic poly(A) polymerases GLD-2 and GLD-4 promote general gene expression via distinct mechanisms
SRP044752: The role of SPK-1 in alternative splicing regulation in C. elegans
Research Institute of Molecular Pathology (IMP)
0 runs in ENA
SRP044765: Condensin-Driven Remodeling of X-Chromosome Topology during Dosage Compensation [RNA-Seq]
Meyer, MCB, HHMI/UCB
0 runs in ENA
SRP044802: Caenorhabditis elegans PAT-Seq of Intestine, pharynx and body muscle transcriptomes
Arizona State University
0 runs in ENA
SRP045110: Blastomere-specific transcriptome sequencing reveals a determinant of anterior specification in C. elegans
Biochemistry and Molecular Biology, Colorado State University
6 runs in ENA
SRP045231: Contrasting invertebrate immune defense behaviors caused by a single gene, the Caenorhabditis elegans neuropeptide receptor gene npr-1
Schulenburg Group, Evolutionary Ecology and Genetics, Zoological Institute, Christian-Albrechts-Universitaet zu Kiel
0 runs in ENA
SRP045499: Cooperative target mRNA destabilization and translation inhibition by miR-58 microRNA family in C. elegans [RNA-Seq]
Michael Hengartner, Institute of Molecular Life Sciences, University of Zurich
0 runs in ENA
SRP045715: RNA-seq of C.elegans treated with bcat-1 RNAi and controls
Leibniz Institute for Age Research - Fritz Lipmann Institute
0 runs in ENA
SRP045742: Caenorhabditis elegans strain:N2, rde-4::unc-69, hrde-1 Transcriptome or Gene expression
SRP045778: Caenorhabditis elegans high resolution developmental transcriptomic time-course
Yanai, Biology, Technion - Israel Institute of Technology
The mid-developmental transition and the evolution of animal body plans. (Levin .. Yanai, 2016)
0 runs in ENA
SRP047293: Differential gene expression in ahr-1 mutants compared to wild-type C. elegans
A. I. Virtanen Institute, Department of Neurobiology, University of Eastern Finland
0 runs in ENA
SRP047336: TDP-1, the C. elegans ortholog of TDP-43, limits the accumulation of double stranded RNA
Link Lab, Integrative Physiology, University of Colorado Boulder
0 runs in ENA
SRP047464: The RtcB RNA ligase is an essential component of the metazoan unfolded protein response.
Jay Hesselberth, Biochemistry and Molecular Gentetics, University of Colorado School of Medicine
0 runs in ENA
SRP049280: Tri-methylation of lysine 36 on H3 restricts gene expression variation during aging and impacts lifespan
Siu Sylvia Lee, Molecular Biology and Genetics, Cornell University
0 runs in ENA
SRP049395: The DREAM complex promotes gene body deposition of H2A.Z for target repression
Ahringer Lab, The Gurdon Institute, University of Cambridge
The DREAM complex promotes gene body H2A.Z for target repression. (Latorre .. Ahringer, 2015)
0 runs in ENA
SRP049412: Defining soma-specific/enriched and germline-specific/enriched transcripts
SRP049413: Functional characterization of C. elegans Y-box binding proteins reveals tissue-specific functions and a critical role in the formation of polysomes (RNA-Seq)
SRP049596: RNA-seq analysis of germline stem cell removal and loss of SKN-1 in C. elegans
Constellation Pharmaceuticals
0 runs in ENA
SRP050039: A variety of Dicer substrates in human and C. elegans (CEL RNA-seq)
Rajewsky lab, Systems Biology of Gene Regulatory Elements, Max Delbrueck Center for Molecular Medicine
A variety of dicer substrates in human and C. elegans. (Rybak-Wolf .. Rajewsky, 2014)
0 runs in ENA
SRP050116: Suppression of Transcriptional Drift Extends C. elegans Lifespan by Postponing the Onset of Mortality
Petrascheck, Chemical Physiology, TSRI
0 runs in ENA
SRP050505: Analysis of intron sequences reveals hallmarks of circular RNA biogenesis in animals
Core Unit Bioinformatics, Berlin Institute of Health
0 runs in ENA
SRP051404: Overlapping and unique signatures in the proteomic and transcriptomic responses of the nematode Caenorhabditis elegans towards pathogenic Bacillus thuringiensis
Schulenburg Group, Evolutionary Ecology and Genetics, Zoological Institute, Christian-Albrechts-Universitaet zu Kiel
0 runs in ENA
SRP051702: mRNA profiling of wildtype, germline depleted, NMD mutant C. elegans whole worms and wildtype dissected gonads
Alan Zahler, MCD Biology, University of California-Santa Cruz
0 runs in ENA
SRP052923: Transcriptomic analysis of germline tumor in fasted C. elegans
Developmental Cell Biology, Biochemistry, Buchmann Institute for Molecular Life Sciences
0 runs in ENA
SRP053371: H3K36 methylation promotes longevity by enhancing transcriptional fidelity [Worm RNA-Seq]
Zaret Lab, Cell & Developmental Biology, The University of Pennsylvania
H3K36 methylation promotes longevity by enhancing transcriptional fidelity. (Sen .. Berger, 2015)
0 runs in ENA
SRP056286: Enrichment of H3K9me2 on unsynapsed chromatin in C. elegans does not target de novo sites [RNA-Seq]
Biology, Syracuse University
0 runs in ENA
SRP056647: Optimization of codon translation rates via tRNA modifications maintains proteome integrity
Max Planck Research Group for RNA Biology, Max Planck Institute for Molecular Biomedicine
0 runs in ENA
SRP056941: Developmental dynamics of C. elegans dosage compensation
Biology, New York University
Developmental Dynamics of X-Chromosome Dosage Compensation by the DCC and H4K20me1 in C. elegans. (Kramer .. Ercan, 2015)
Untangling the Contributions of Sex-Specific Gene Regulation and X-Chromosome Dosage to Sex-Biased Gene Expression in Caenorhabditis elegans. (Kramer .. Ercan, 2016)
0 runs in ENA
SRP057263: CSR-1 and P granules suppress sperm-specific transcription in the C. elegans germline
Updike Lab, Mount Desert Island Biological Laboratory
0 runs in ENA
SRP057272: Endogenous DAF-16 genome-wide recruitment under low Insulin signalling condition in Caenorhabditis elegans
Molecular Aging Lab, National Institute of Immunology
0 runs in ENA
SRP057305: Widespread cytoplasmic polyadenylation programs asymmetry in the germline and early embryo
0 runs in ENA
SRP057713: RNA sequencing of C. elegans lsm-1(tm3585) mutants at L3 stage
Modelling human diseases in C. elegans, Cancer and Human Molecular Genetics, IDIBELL
0 runs in ENA
SRP057881: Transcriptome analysis of N2 and flp-6 Caenorhabditis elegans at 25 °C
SRP058023: Comparative genomics of Steinernema reveals deeply conserved gene regulatory networks
University of California, Irvine
0 runs in ENA
SRP058358: RNA-seq profile of two daf-2 (e1370);daf-12(m20) samples
0 runs in ENA
SRP058746: Transcriptional profile of C. elegans following RNAi of elt-2 [L4 stage]
Developmental Biology, Stanford University
0 runs in ENA
SRP058747: Transcriptional profile of C. elegans following over-expression of elt-2 [L4 stage & Day 13]
Developmental Biology, Stanford University
0 runs in ENA
SRP058751: Transcriptional profile of C. elegans following RNAi of elt-2 [L1 stage]
Developmental Biology, Stanford University
0 runs in ENA
SRP059285: Tissue homogeneity requires inhibition of unequal gene silencing during development
Jose Lab, Cell Biology and Molecular Genetics, University of Maryland College Park
0 runs in ENA
SRP059743: RNA sequencing analysis of DAF-16 target gene expression when math-33 function is genetically inactivated
Tony Hunter, MCBL, Thomas Heimbucher
0 runs in ENA
SRP060311: Gene expression in four C.elegans natural isolates
University of Toronto
0 runs in ENA
SRP060554: Caenorhabditis elegans ALT transcriptome
Seoul National University
0 runs in ENA
SRP061927: Caenorhabditis elegans intestinal transcriptome
Max Planck Institute for Developmental Biology
0 runs in ENA
SRP062026: Defining the Roles and Regulation of the GATA-factor ELT-2 in the C. elegans Endoderm
Biochemistry and Molecular Biology, Colorado State University
0 runs in ENA
SRP062096: Transcriptome analysis of sexual dimorphism in the somatic gonadal precursor cells of Caenorhabditis elegans
Zarkower, Genetics, Cell Biology & Development, University of Minnesota
0 runs in ENA
SRP062670: Deep sequencing of poly(A)-selected RNAs from whole nematode C. elegans during aging
SRP062881: daf-16/FoxO isoform-specific deletion mutants
Bioinformatics Core, BRCF, University of Michigan
0 runs in ENA
SRP063616: RNA-seq from animals treated with RNAi against prp-8, prp-6, and prp-31
Modelling human diseases in C. elegans, Cancer and Human Molecular Genetics, IDIBELL
0 runs in ENA
SRP064324: Osmosensory neurons modulate hypertonic stress resistance in C. elegans by controlling protein damage in non-neuronal cells
Molecular and Biomedical Sciences, University of Maine
0 runs in ENA
SRP064516: Translation Readthrough Mitigation
SRP064859: RNA-seq for monitoring expression changes in absence of chromatin anchoring
Friedrich Miescher Institute
0 runs in ENA
SRP065341: Germline nuclear RNAi in C. elegans represses transgenerational inheritance of heat-induced gene transcriptional activation (mRNA profiling)
Molecular Biology and Biochemistry, Rutgers University
0 runs in ENA
SRP066258: Caenorhabditis elegans Transcriptome or Gene expression
Princeton University
0 runs in ENA
SRP066352: A Small RNA-Catalytic Argonaute Pathway Tunes Germline Transcript Levels to Ensure Embryonic Divisions
Dept. of Cellular & Molecular Medicine, University of California San Diego, Ludwig Institute for Cancer Research, San Diego Branch
0 runs in ENA
SRP066376: Whole RNA sequencing to identify targets of ets-4 that are responsible for rege-1 (C30F12.1) phenotype
Friedrich Miescher Institute
Ribonuclease-Mediated Control of Body Fat. (Habacher .. Ciosk, 2016)
0 runs in ENA
SRP066378: Whole RNA sequencing to identify targets of the RNase domain protein encoded by rege-1 (C30F12.1)
Friedrich Miescher Institute
Ribonuclease-Mediated Control of Body Fat. (Habacher .. Ciosk, 2016)
0 runs in ENA
SRP066585: Caenorhabditis elegans strain:Bristol Transcriptome or Gene expression
Monash University
0 runs in ENA
SRP066993: RNA-seq from L4 animals treated with RNAi against gfp (control), ham-3, and swsn-2.2
Modelling human diseases in C. elegans, Cancer and Human Molecular Genetics, IDIBELL
0 runs in ENA
SRP067921: Ingested double-stranded RNA engages multiple silencing mechanisms in C. elegans
Jose Lab, Cell Biology and Molecular Genetics, University of Maryland College Park
0 runs in ENA
SRP067973: Long-range signaling at the neural-intestinal axis promotes organismal heme homeostasis
Laboratory of Molecular Biology, NIH/NIDDK
Inter-organ signalling by HRG-7 promotes systemic haem homeostasis. (Sinclair .. Hamza, 2017)
0 runs in ENA
SRP068357: Nuclear Envelope Retention of LINC Complexes Is Promoted by SUN-1 Oligomerization in the Caenorhabditis elegans Germ Line
Michael Jantsch, Anatomy, Medical University of Vienna
0 runs in ENA
SRP068497: mRNA sequencing in cde-1 mutants versus WT C. elegans infected by the Orsay virus
Gurdon Institute, University of Cambridge
0 runs in ENA
SRP068564: Transcriptome profiling of sterile daf-2; mes-1 double vs. mes-1 single mutants
Strome, MCD Biology, University of California, Santa Cruz
0 runs in ENA
SRP069865: Caenorhabditis elegans strain:Bristol N2 Raw sequence reads
University of Massachusetts Medical School
0 runs in ENA
SRP069872: Uncoupling X chromosome number from sex determination separates contribution of sex and X dose to sex-biased gene expression in C. elegans
Biology, New York University
0 runs in ENA
SRP070204: TRX-1 Regulates SKN-1 Nuclear Localization Cell Non-Autonomously in Caenorhabditis elegans
UT Health Science Center
0 runs in ENA
SRP070753: Mitochondrial stress induces chromatin reorganization to promote longevity and UPRmt
Dillin Lab, 430E Li Ka Shing, University of California, Berkeley
0 runs in ENA
SRP071138: HLH-30/TFEB-mediated autophagy functions in a cell-autonomous manner for epithelium intrinsic cellular defense against bacterial pore-forming toxin in C. elegans
National Cheng Kung University
0 runs in ENA
SRP071287: Two Conserved Histone Demethylases Regulate Mitochondrial Stress-Induced Longevity
Dillin Lab, 430E Li Ka Shing, University of California, Berkeley
0 runs in ENA
SRP071967: dsRNAs expressed in C. elegans development
Brenda Bass, Biochemistry, University of Utah
0 runs in ENA
SRP072091: Transcriptional profile of C. elegans fed E. coli (OP50) and B. subtilis (PY79)
Developmental Biology, Stanford University
0 runs in ENA
SRP072274: Nucleosome fragility is associated with future transcriptional response to developmental cues and stress in C. elegans
Lewis-Sigler Institute for Integrative Genomics, Princeton University
0 runs in ENA
SRP072327: Anchoring of Heterochromatin to the Nuclear Lamina Reinforces Dosage Compensation-Mediated Gene Repression
Csankovszki, MCDB, University of Michigan
0 runs in ENA
SRP072711: Caenorhabditis elegans Periodic An/Tn Clusters
Stanford University
0 runs in ENA
SRP072746: Localization of RNAPII and 3’ end formation factor CstF subunits on C. elegans genes and operons [RNA-seq]
CU Boulder
0 runs in ENA
SRP072954: XRN2 Autoregulation and Control of Polycistronic Gene Expression in Caenorhabditis elegans
Epigenetics, Friedrich Miescher Institute
0 runs in ENA
SRP073117: Post-transcriptional regulation by the let-7 microRNA and the TRIM-NHL protein LIN41 [RNA-seq]
Friedrich Miescher Institute
0 runs in ENA
SRP074175: mRNA expression profile of dop-1 mutants to wild- type animals during adulthood (L4+48 hours) using RNA-seq
Room 33, Department of Genetics, Waksman Institute, Rutgers The State University of New Jersey
0 runs in ENA
SRP074754: Caenorhabditis elegans Raw sequence reads
SRP075274: RNA-seq analysis in C. elegans larval development and heat shock
Morimoto, Molecular Biosciences, Northwestern University
0 runs in ENA
SRP075276: RNA-seq analysis of hsf-1 mutant in C. elegans larval development
Morimoto, Molecular Biosciences, Northwestern University
0 runs in ENA
SRP075489: Germline- and soma-specific heritable epigenetic silencing at an endogenous locus (RNA-Seq)
Craig P. Hunter, Molecular and Cellular Biology, Harvard University
0 runs in ENA
SRP075984: Caenorhabditis elegans strain:N2 Raw sequence reads
Arizona State University
0 runs in ENA
SRP076298: A-to-I RNA editing promotes developmental-stage specific gene and lncRNA expression
Ayelet Lamm, Biology, Technion
0 runs in ENA
SRP076404: Expression profiles in Caenorhabditis elegans mutants lacking an intestinally expressed microRNA mir-60 that promote adaptive response against chronic oxidative stress
The Laboratory of Ageing, Centenary Institute, The University of Sydney
0 runs in ENA
SRP076415: Developmental transcriptomes of the two sexes in Caenorhabditis elegans during sexual maturation
Scott Emmons lab, Genetics, Albert Einstein College of Medicine
0 runs in ENA
SRP076810: Transgenerational transmission of environmental information in C. elegans
SRP076816: GEO accession GSE83523 is currently private and is scheduled to be released on Jul 05, 2018.
Technion
0 runs in ENA
SRP077649: Glucose or Altered Ceramide Biosynthesis Mediate Oxygen Deprivation Sensitivity Through Novel Pathways Revealed by Transcriptome Analysis in Caenorhabditis elegans
SRP078295: The genome-wide role of HSF-1 in the regulation of gene expression in Caenorhabditis elegans
University of South Florida
0 runs in ENA
SRP078331: An H4K16 histone acetyltransferase mediates decondensation of the X chromosome in C. elegans males
Csankovszki, MCDB, University of Michigan
0 runs in ENA
SRP078368: C. elegans polyA selected RNA-seq raw sequencing reads
University of California, San Diego
0 runs in ENA
SRP078939: Dynamic Control of X-Chromosome Conformation and Repression by a Histone H4K20 Demethylase
Meyer, MCB, HHMI/UCB
0 runs in ENA
SRP080806: Histone H3K9 methylation is dispensable for Caenorhabditis elegans development but required for RNA:DNA hybrid-associated repeat stability
Friedrich Miescher Institute for Biomedical Research
0 runs in ENA
SRP081065: Caenorhabditis elegans Transcriptome or Gene expression
Kunming Institute of Botany, Chinese Academy of Sciences
0 runs in ENA
SRP081238: Comparison of transcriptomes of sig-7 (RNAi) vs WT C. elegans early stage embryos by RNA-seq
MCD Biology, UC Santa Cruz
0 runs in ENA
SRP082497: TAIL-seq in cde-1 mutants versus WT C. elegans infected by the Orsay virus
Eric Miska, Gurdon Institute, University of Cambridge
0 runs in ENA
SRP082984: LIN-28 balances longevity and germline stem cell number in C. elegans through let-7/AKT/DAF-16 axis
Jing-Dong J. Han's Lab, CAS-MPG Partner Institute for Computational Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences
0 runs in ENA
SRP084244: Comparative transcriptomics of Steinernema and Caenorhabditis single embryos reveals gene expression divergence during early embryogenesis
University of California, Irvine
0 runs in ENA
SRP086954: Vitamin D Promotes Protein Homeostasis and Longevity via the Stress Response Pathway Genes SKN-1, IRE-1, and XBP-1
Melov Lab, Buck Institute for Research on Aging
0 runs in ENA
SRP087443: Decoupling the downstream effects of germline nuclear RNAi reveals that transcriptional repression and heritable RNAi are independent of the H3K9me3 response in C. elegans [RNA-seq]
Molecular Biology and Biochemistry, Rutgers University
0 runs in ENA
SRP089617: Caenorhabditis elegans Transcriptome or Gene expression
National Institute of Immunology
0 runs in ENA
SRP089981: Transcriptomic profiling of germlines and intestines of C. elegans deficient in the COMPASS H3K4me3 methyltransferase complex
Stanford University
Mono-unsaturated fatty acids link H3K4me3 modifiers to C. elegans lifespan. (Han .. Brunet, 2017)
0 runs in ENA
SRP090119: mRNA Next Generation Sequencing of long-lived C. elegans mutants lacking the replication-independent histone variant H3.3
SRP090696: A team of heterochromatin factors collaborates with small RNA pathways to combat repetitive elements and germline stress [RNA-seq]
The Gurdon Institute, University of Cambridge
0 runs in ENA
SRP090699: Developmental constraints shape the evolution of the nematode mid-developmental transition
Technion
0 runs in ENA
SRP090988: Cooperation between a hierarchical set of recruitment sites specifically targets the C. elegans dosage compensation complex to the X chromosomes.
Ercan, Biology, New York University
0 runs in ENA
SRP092256: Gene expression changes in dauer defective strains
DCM&B, University of Michigan
0 runs in ENA
SRP093250: NHR-14 loss of function couples intestinal iron uptake with innate immunity in C. elegans through PQM-1 signaling
SRP093385: morc-1 regulates transgenerational heterochromatin maintenance at nuclear RNAi targets
Department of Biology, Johns Hopkins University
0 runs in ENA
SRP094762: mRNA-seq comparison of L1 larvae experiencing osmotic and starvation-induced arrest
Duke University
0 runs in ENA
SRP094827: RNA-seq of N2 and lin-45(n2018) mutant C.elegans responses to osmotic stress
SRP095453: Transcriptome profiling of P-granule-depleted or P-granule mutant gonads versus control gonads over time
MCD Biology, UC Santa Cruz
0 runs in ENA
SRP095467: L4, day 1, day 7 and day 10 old total RNA-Seq from Caenorhabditis elegans
University of Nevada, Reno
0 runs in ENA
SRP095564: LSM2-8 and XRN-2 contribute to the silencing of H3K27me3 marked genes through targeted RNA decay I
Friedrich Miescher Institute
0 runs in ENA
SRP095671: RNA-Seq analysis of dietary restriction and loss of SEK-1 in C. elegans
Keith Blackwell, Islet Cell and Regenerative Biology, Joslin Diabetes Center
0 runs in ENA
SRP095719: The C. elegans transcriptome is regulated by environmental and developmental history
Life Sciences Complex, Biology, Syracuse University
0 runs in ENA
SRP095954: JMJD5/PHF8 regulates H3K36me2 and it is required for late steps of homologous recombination and genome integrity
Salcini, BRIC, University of Copenhagen
0 runs in ENA
SRP096640: Caenorhabditis elegans LITE-Seq germline 3''UTR sequencing
New York University
0 runs in ENA
SRP096828: Differential gene expression between feminized C. elegans male and female germlines
Ercan, Biology, New York University
0 runs in ENA
SRP096897: Activation of DAF-16/FOXO by reactive oxygen species promotes longevity in long- lived mitochondrial mutants in C. elegans
Center For Neurodegenerative Science, Van Andel Research Institute
0 runs in ENA
SRP097095: Gene changes over aging in the C.elegans rrf-3(pk1426) mutant
Molecular Epigenetics, Institute of molecular Biology
0 runs in ENA
SRP097655: Transcriptomics of a diet gene pair in C. elegans
SRP097783: Analysis of nonsense-mediated mRNA decay in daf-2 mutants
Room 4203, Life Sciences, KAIST
0 runs in ENA
SRP098734: Genome-wide expression analysis of Caenorhabditis elegans AXIN mutant
LSb322, Biology, McMaster University
PRY-1/Axin signaling regulates lipid metabolism in Caenorhabditis elegans. (Ranawade .. Gupta, 2018)
0 runs in ENA
SRP098791: The Conserved Intron Binding Protein EMB-4 Plays Differential Roles in Germline Small RNA Pathways of C. elegans
Claycomb Lab, Department of Molecular Genetics, University of Toronto
0 runs in ENA
SRP098805: A Highly Conserved GAD-1 Is Required for Pre-mRNA Splicing and Transcription Elongation by Forming Spliceosome with NineTeen Complex
Hong Kong Baptist University
0 runs in ENA
SRP099636: Analysis of C. elegans muscle transcriptome using trans-splicing-based RNA tagging (SRT)
Michael Q. Zhang, Biology, Tsinghua Univeristy
0 runs in ENA
SRP100172: Impaired DNA replication derepresses chromatin and generates a transgenerationally inherited epigenetic memory
SRP100571: Role of STA-1 and SID-3 upon Orsay virus infection in C. elegans (RNA-Seq)
Gurdon Institute, University of Cambridge
0 runs in ENA
SRP100601: RNA-sequencing of C.elegans isp-1 mutant and superoxide dismutase-isp-1 double mutants
SRP100798: Transcriptional response to viral infection in Caenorhabditis nematodes
Washington University in St. Louis
0 runs in ENA
SRP100886: Genetic Analysis of a Metazoan Pathway using Transcriptomic Phenotypes
SRP101574: RNAseq of C. elegans N2 raised on LB- and M9-cultured E. coli MG1655
Baylor College of Medicine
0 runs in ENA
SRP103653: Caenorhabditis elegans RNA-seq project
Peking University School of Stomatology
0 runs in ENA
SRP103774: RNA sequencing of drh-3(rrr2) mutants
SRP103917: Two distinct transcription termination modes dictated by promoters
Epigenetics, Friedrich Miescher Institute
Two distinct transcription termination modes dictated by promoters. (Miki .. Großhans, 2017)
0 runs in ENA
SRP104170: The role of the TGF-ß/DBL-1 pathway in shaping the C. elegans gut microbiota
UC Berkeley
0 runs in ENA
SRP104288: Impaired locomotor behavior of C. elegans neuroligin mutants is dependent of the catechol-O-methyltransferase COMT-4
Genetics, University of Cordoba
0 runs in ENA
SRP105206: A Chinese herbal formula, Gengnianchun, ameliorates ß-amyloid peptide toxicity in a Caenorhabditis elegans model of Alzheimer's disease
The First Hospital of Jilin University
0 runs in ENA
SRP106459: mRNA-seq comparison of N2 and tps1;tps2 double mutants with and without trehalose supplementation
SRP106501: Network modeling reveals genetic interactions that influence C. elegans defense against infection
Harvard University
0 runs in ENA
SRP106518: Global transcriptional responce in C.elegans on a high glucose diet
SRP106801: RNA binding proteins in C. elegans
Harvard University
0 runs in ENA
SRP106869: Genome-wide DNA accessibility maps and differential gene expression using ChIP-seq, ATAC-seq and RNA-seq for the human secondary fibroblast cell line hiF-T and whole worms with and without knockdown of FACT complex
Ohler, Berlin Institute for Medical Systems Biology, Max Delbrück Center for Molecular Medicine
0 runs in ENA
SRP106988: The C. elegans neural editome reveals an ADAR target mRNA required for proper chemotaxis
UCSD
0 runs in ENA
SRP107232: Global proteomic- and transcriptomic analyses of starvation responses reveal a central role for lipoprotein metabolism in acute starvation survival in C. elegans
Biochemistry and Molecular Biology, University of Southern Denmark
0 runs in ENA
SRP107241: ALG-5 is a miRNA-associated Argonaute required for proper developmental timing in the Caenorhabditis elegans germline
Colorado State University
0 runs in ENA
SRP108932: The rules of piRNA targeting reveals resistance of endogenous genes to piRNA silencing in C. elegans
University of Chicago
0 runs in ENA
SRP109222: RNA-seq of C. elegans worms treated with RNAi toward daf-2 or cav-1 or left untreated (EV) to compare gene expression profiles
The Hebrew University of Jerusalem
0 runs in ENA
SRP110292: Global Gene Expression profile in homozygous frk-1(ok760) mutants versus wildtype in the nematode, Caenorhabditis elegans using RNA Seq
SRP110515: Beyond the polymerase-gamma theory: Respiratory chain inhibition and production of ROS as modes of NRTI induced mitochondrial toxicity
Microarray Department, University of Amsterdam
0 runs in ENA
SRP110703: SET-9 and SET-26, the C. elegans homologs of human MLL5, are critical for germline development and longevity
Cornell University
0 runs in ENA
SRP110754: Chromatin reprogramming in primordial germ cells requires Nanos-dependent down-regulation of the synMuvB transcription factor LIN-15B
Dr. Geraldine Seydoux, MBG, Johns Hopkins University
0 runs in ENA
SRP110800: SET-9 and SET-26, the C. elegans homologs of human MLL5, are critical for germline development and longevity
Cornell University Lee lab
0 runs in ENA
SRP111062: H3K9me2 and BRCA1 cooperate to prevent satellite repeat transcription, R-loop formation and germline sterility [RNA-seq]
Friedrich Miescher Institute
0 runs in ENA
SRP111138: The C. elegans ortholog of TDP-43 regulates the chromatin localization of the heterochromatin protein 1 homolog, HPL-2
Link Lab, Integrative Physiology, University of Colorado Boulder
0 runs in ENA
SRP111346: Global characterization of direct substrates of nonsense-mediated mRNA decay in Caenorhabditis elegans
Genetics, University of Wisconsin-Madison
The Substrates of Nonsense-Mediated mRNA Decay in Caenorhabditis elegans. (Muir .. Anderson, 2018)
0 runs in ENA
SRP112567: Variations in diet type and temperature significantly affect the transcriptional profile of C. elegans
Centro de Investigación Biomédica de La Rioja
0 runs in ENA
SRP112904: Transcriptomic analysis of wild-type and lin-22 mutants in C.elegans
Michalis Barkoulas's lab, Life Sciences, Imperial College London
0 runs in ENA
SRP112905: Transcriptomic analysis of control and Myzocytiopsis humicola-infected C. elegans
Michalis Barkoulas's lab, Life Sciences, Imperial College London
0 runs in ENA
SRP113021: RNA-seq of C.elegans sma-4(rax3), sma-2(rax5) and wild-type strains
Baylor College of Medicine
0 runs in ENA
SRP113614: Indole from commensal bacteria impact the aging transcriptome of C. elegans
Kalman Lab, Pathology & Laboratory Medicine, Emory University
Indoles from commensal bacteria extend healthspan. (Sonowal .. Kalman, 2017)
0 runs in ENA
SRP114957: RNAseq of FACS-sorted C.elegans neurons from wildtype and thoc-5(wy822) mutant animals.
Li, Genetics, Stanford University
0 runs in ENA
SRP115391: Caenorhabditis elegans Raw sequence reads NHL-2
University of Massachusetts Medical School
0 runs in ENA
SRP115483: Two evolutionary developmental strategies for miRNA gene regulation in animal embryogenesis [CE_RNA-seq]
Itai Yanai, Biochemistry and Molecular Pharmacology, New York University, School of Medicine
Bimodal evolutionary developmental miRNA program in animal embryogenesis. (Avital .. Yanai, 2017)
0 runs in ENA
SRP115527: Nonsense-mediated decay triggers nonstop mRNA decay in a metazoan
Stanford Univerisy
0 runs in ENA
SRP116980: Dauer and reproductive development RNA-seq
California Institute of Technology
0 runs in ENA
SRP117631: Effect of liquid cultivations on N2 and AB1 strains of C. elegans
University of Delaware
0 runs in ENA
SRP117954: Evolution of piRNAs in nematodes
Peter Sarkies lab - MRC London Institute of Medical Sciences/Imperial College London
0 runs in ENA
SRP119100: Transcriptomic response to changes in C. elegans diet
BioCI
0 runs in ENA
SRP119250: RNA-Seq of L4 C. elegans
Pasquinelli Lab, Biological Sciences, University of California, San Diego
Short poly(A) tails are a conserved feature of highly expressed genes. (Lima .. Pasquinelli, 2017)
0 runs in ENA
SRP119251: Poly(A) Tail Length of L4 C. elegans
Pasquinelli Lab, Biological Sciences, University of California, San Diego
Short poly(A) tails are a conserved feature of highly expressed genes. (Lima .. Pasquinelli, 2017)
0 runs in ENA
SRP119353: The combinatorial control of alternative splicing in C. elegans
University of Toronto
0 runs in ENA
SRP120036: The effects of mitochondrial- and histone stress on the C. elegans transcriptome
SRP121219: Analysis of putative transcription factor binding regions during natural aging in C. elegans
POSTECH
0 runs in ENA
SRP123154: An Elongin-Cullin-SOCS-box Complex Regulates Stress-induced Serotonergic Neuromodulation Stress-induced Serotonergic Neuromodulation
Cell and Systems Biology, University of Toronto
0 runs in ENA
SRP124524: Transcriptome analysis of C. elegans embryos lacking ADARs and the 26G pathway
Brenda Bass, Biochemistry, University of Utah
0 runs in ENA
SRP124969: Differential expression of H3.3 genes and their role in modulating temperature stress response in Caenorhabditis elegans
Steiner, Department of Molecular Biology, University of Geneva
0 runs in ENA
SRP125293: Regulation of Lifespan by Neural Excitation and REST [Day 2]
Yankner, Genetics, Harvard Medical School
Regulation of lifespan by neural excitation and REST. (Zullo .. Yankner, 2019)
0 runs in ENA
SRP125869: Study of an allelic series using transcriptomic phenotypes
Caltech
0 runs in ENA
SRP126163: Role of SKN-1 in dpy-7 and osmotic gene induction
SRP126312: NHR-49/HNF4 integrates regulation of fatty acid metabolism with a protective transcriptional response to oxidative stress and fasting
Taubert Lab, Medical genetics, Centre for Molecular Medicine and Therapeutics, UBC
0 runs in ENA
SRP126629: The zinc finger transcription factor PQM-1 is a mediator of transcellular chaperone signalling and novel regulator of proteostasis in C. elegans
Faculty of Biological Sciences, School of Molecular and Cell Biology, Garstang 8.53c, UNIVERSITY OF LEEDS
0 runs in ENA
SRP127019: Drug synergy slows ageing and improves healthspan through IGF and SREBP lipid signaling
Nematode Ageing Lab, Science/ Biochemistry, Yale-NUS College / NUS
0 runs in ENA
SRP127051: Hypoxia-inducible factor cell non-autonomously regulates C. elegans stress responses and behavior via a nuclear receptor
SRP129557: Caenorhabditis elegans strain:N2 Transcriptome or Gene expression
University of California San Francisco
0 runs in ENA
SRP130946: SET-9 and SET-26 are H3K4me3 readers and play critical roles in germline development and longevity
Cornell University
0 runs in ENA
SRP131397: Caenorhabditis elegans Raw sequence reads
University of Massachusetts Medical School
0 runs in ENA
SRP131463: Sequencing of Caenorhabditis elegans wildtype strain (N2) treated with T25B9.1 RNAi for 5 days after L4 larvae stage.
Leibniz Institute for Age Research - Fritz Lipmann Institute
0 runs in ENA
SRP132064: Physical and functional interaction between the SET1 complex component CFP-1/CXXC and the Sin-3S/HDAC complex in C. elegans embryos
SRP132468: Ribotagging on NSM neurons in C. elegans
Flavell, Brain and Cognitive Sciences, MIT
0 runs in ENA
SRP132953: Disruption in A-to-I editing levels affects C. elegans development more than a complete lack of editing
Ayelet Lamm, Biology, Technion
0 runs in ENA
SRP133204: Transcriptome of clec-4 for the nematode Caenorhabditis elegans
Schulenburg Group, Evolutionary Ecology and Genetics, Zoological Institute, Christian-Albrechts-Universitaet zu Kiel
0 runs in ENA
SRP133269: Role of mitochondrial unfolded protein response transcription fatcor ATFS-1 in lifespan of long-lived mitochondrial mutants
Van Andel Institute
0 runs in ENA
SRP133277: Comparison of transcriptomes of N2 and fog-2(q71) mutant Caenorhabditis elegans
Haag Lab, Department of Biology, University of Maryland
0 runs in ENA
SRP133403: Neurohormonal signalling via a cytosolic sulfotransferase controls insulin sensitivity of C. elegans
SRP133439: C. elegans total RNA profiles of worms treated with RNAi for different Integrator complex
Centro de Investigación Biomédica de La Rioja
0 runs in ENA
SRP133671: The Caenorhabditis elegans Female-Like State: Decoupling the Transcriptomic Effects of Aging and Sperm Status
SRP133787: Differential expression analysis of wildtype and zip-3(gk3164) mutant with next generation sequencing
U Mass Medical School
12 runs in ENA
SRP133825: Identification of DAF-16/FoxO targets associated with longevity
DCM&B, University of Michigan
0 runs in ENA
SRP133834: Transcriptome of microbiome for the nematode Caenorhabditis elegans
Schulenburg Group, Evolutionary Ecology and Genetics, Zoological Institute, Christian-Albrechts-Universitaet zu Kiel
0 runs in ENA
SRP134112: Discovery of unique loci that underlie nematode responses to benzimidazoles
SRP134126: Quantify fitness and dissect pleiotropic traits to study adaptation strategy of laboratory domesticated C. elegans strain N2
Georgia Institute of Technology
0 runs in ENA
SRP134390: RNA-seq from animals treated, and non treated, with cisplatin
Modelling human diseases in C. elegans, Cancer and Human Molecular Genetics, IDIBELL
0 runs in ENA
SRP135519: Transcriptome of elt-2 for the nematode Caenorhabditis elegans
Schulenburg Group, Evolutionary Ecology and Genetics, Zoological Institute, Christian-Albrechts-Universitaet zu Kiel
0 runs in ENA
SRP136035: Effects of larval density on gene regulation in C. elegans during routine L1 synchronization
Oliver Rando, BMP, Umass Medical School
0 runs in ENA
SRP136535: A Protein-Protein Interaction Underlies the Molecular Basis for Substrate Recognition by an Adenosine to Inosine RNA Editing Enzyme
Medical Sciences, Indiana University
0 runs in ENA
SRP137713: RNA-seq on D5 C. elegans in WT(N2), alg-1(gk214), alg-2(ok304)
Pasquinelli Lab, Biological Sciences, University of California, San Diego
0 runs in ENA
SRP139555: Next Generation Sequencing and Quantitative Analysis of mRNAs in Wild Type and ceh-60 Mutant Caenorhabditis elegans
Integrative Program for Biological & Genome Sciences, University of North Carolina at Chapel Hill
0 runs in ENA
SRP139961: Differential expression analysis of wildtype, atfs-1(tm4919) and zip-3(gk3164) mutant with next generation sequencing
U Mass Medical School
0 runs in ENA
SRP140674: The memory of environmental chemical exposure in C. elegans is dependent on the Jumonji demethylases jmjd-2 and jmjd-3/utx-1
Allard lab and Yang Lab, Integrative Biology and Physiology, University of California Los Angeles
0 runs in ENA
SRP142175: mRNA of fed and starved C. elegans L1 larvae 3 generations following control, short-term dauer or long-term dauer conditions
SRP143903: Transcriptional response of Caenorhabditis elegans when exposed to S. flexneri
The Australian National University
0 runs in ENA
SRP144913: Inter-species genetic regulation of longevity: ?hns E. coli activate C. elegans DAF-16 in distinct ways from IIS
Genome structure research center, Korea Research Institute of Bioscience and Biotechnology
HASH(0x33c9ae8) (Shin .. Kwon, 2020)
0 runs in ENA
SRP145139: mRNA-seq comparison of C. elegans L1 larvae with parents experiencing dietary restriction or ad libitum conditions
Duke University
0 runs in ENA
SRP145329: Experimental Mutation Accumulation in Caenorhabditis elegans under Differing Population Size
Texas A&M University
0 runs in ENA
SRP145566: Changes in piRNA and gene expressions upon temperature shift and bacterial infection
MRC London Institute of Medical Science
0 runs in ENA
SRP146096: Chromatin accessibility dynamics across C. elegans development and ageing [lcap]
The Gurdon Institute, University of Cambridge
Chromatin accessibility dynamics across C. elegans development and ageing. (Jänes .. Ahringer, 2018)
0 runs in ENA
SRP146247: Chromatin accessibility dynamics across C. elegans development and ageing [scap]
The Gurdon Institute, University of Cambridge
Chromatin accessibility dynamics across C. elegans development and ageing. (Jänes .. Ahringer, 2018)
0 runs in ENA
SRP148595: Spatial Transcriptomics of C. elegans Males and Hermaphrodites Identifies Sex-Specific Differences in Gene Expression Patterns
Alexander van Oudenaarden, Hubrecht Institute
0 runs in ENA
SRP149010: Comparison of WT to atfs-1(null) & WT to atfs-1(et18) in C. elegans by deep sequencing
Molecular Cellular and Cancer Biology, UMass Medical School
HASH(0x728d7d8) (Shpilka .. Haynes, 2021)
0 runs in ENA
SRP149073: mRNA-seq of effects of food perception in C. elegans
SRP149360: Gene expression regulated by warm temperature in C. elegans
Chongqing University
0 runs in ENA
SRP149465: Whole transcriptome profiling by RNA-sequencing of RNA from N2 and F01D4.5(baf20) C. elegans
University of Texas Health Science Center
0 runs in ENA
SRP150084: Microtubule regulators act in the nervous system to modulate fat metabolism and longevity through DAF-16 in C. elegans
Chen Lab, Barshop Institute, Universality of Texas Health Science Center at San Antonio
0 runs in ENA
SRP150364: RBM-5 modulates U2AF large subunit-dependent alternative splicing in C. elegans
Center for Medical Genetics, School of Life Sciences, Central South University, Changsha, Hunan, China
RBM-5 modulates U2AF large subunit-dependent alternative splicing in C. elegans. (Zhou .. Ma, 2018)
0 runs in ENA
SRP150370: C. elegans germlines that inherited only paternal chromosomes (non-Mendelian inheritance, ''red-head worms'') and the germlines of their offspring vs. germlines that inherited both maternal and paternal chromosomes (Mendelian inheritance, HBR1280 control)
MCD Biology, UC Santa Cruz
0 runs in ENA
SRP150372: RNA-seq transcriptome profiling of 1) C. elegans male germlines vs. oogenic germlines, and 2) male germlines, sperm, and F1 offspring germlines when offspring inherited sperm chromatin lacking H3K27me3.
MCD Biology, UC Santa Cruz
0 runs in ENA
SRP150643: Spatio-temporal m(i)RNA architecture and 3' UTR regulation in the C. elegans germline
Systems Biology of Gene Regulatory Elements, Berlin Institute for Medical Systems Biology, Max Delbrück Center for Molecular Medicine
0 runs in ENA
SRP150845: Gene expression changes upon depletion of H3K36 methylation by mutating met-1 and RNAi depleting mes-4 in worm L1 larvae
Friedrich Miescher Institute
0 runs in ENA
SRP150846: Gene expression changes in mrg-1 mutant L1 larvae compared to wild type.
Friedrich Miescher Institute
0 runs in ENA
SRP151363: RNA-seq and Ribo-seq upon RNAi in C. elegans
UC Santa Cruz
0 runs in ENA
SRP151477: Deciphering the C. elegans embryonic transcriptome with tissue, time, and alternative splicing resolution
University of Washington
0 runs in ENA
SRP151483: Caenorhabditis elegans strain:Bristol (N2) Raw sequence reads
Princeton University
0 runs in ENA
SRP151529: Transcriptional analysis of early and late generation nuclear RNAi deficient animals
UNC Genetics Department
0 runs in ENA
SRP152334: DAF-16/FOXO and HLH-30/TFEB function as combinatorial transcription factors to promote stress resistance and longevity
Karolinska Institute
0 runs in ENA
SRP152538: mRNA profiles of nxf-1 (t2160) and wild type C. elegans in adult stage
SRP153335: Isolated C. elegans germ nuclei exhibit distinct genomic profiles of histone modification and gene expression
SRP154142: WDR-23 and SKN-1 Nrf2 coordinate with the BLI-3 dual oxidase in response to iodide-triggered oxidative stress
Central South University
0 runs in ENA
SRP154733: Local inhibition of PRC2 activity by histone H3.3K27M drives replication defects through misregulation of the JNK pathway [RNA-seq]
Steiner, Department of Molecular Biology, University of Geneva
0 runs in ENA
SRP155220: Caenorhabditis elegans heterochromatin factor SET-32 plays an essential role in transgenerational initiation of nuclear RNAi-mediated epigenetic silencing (RNA-Seq)
Molecular Biology and Biochemistry, Rutgers University
23 runs in ENA
SRP155352: The nuclear hormone receptor NHR-86 controls anti-pathogen responses in C. elegans [RNA-seq]
Read Pukkila-Worley, Medicine, University of Massachusetts Medical School
0 runs in ENA
SRP155469: Adult C. elegans neuronal XBP-1s dependent transcriptional changes in the intestine
MRC Laboratory of Molecular Biology
0 runs in ENA
SRP155700: Caenorhabditis elegans strain:N2 Raw sequence reads
Amsterdam UMC
0 runs in ENA
SRP156483: Transcriptome wide change upon mitochondial stress in C.elegans
peking university
0 runs in ENA
SRP157069: Transcriptomic Analysis of the Intracellular Pathogen Response (IPR)
Troemel, Cell and Developmental Biology, University of California, San Diego
0 runs in ENA
SRP157100: The spatial and temporal dynamics of the nuclear RNAi-targeted retrotransposon transcripts in Caenorhabditis elegans [RNA-seq]
Molecular Biology and Biochemistry, Rutgers University
12 runs in ENA
SRP159194: Transcriptional profiling of C. elegans on pathogenic Pseudomonas aeruginosa
SRP159488: Illumina sequencing of 4 Caenorhabditis species L4-early adult polyA+ 50bp PE RNAseq
Centre for Genomic Regulation (CRG)
0 runs in ENA
SRP159636: Polysome profiling and mRNA-seq to quantify translational gene regulation in dietary restricted C. elegans and in a long-lived daf-2:rsks-1 double mutant.
Rollins Lab, MDI Biological Laboratory
0 runs in ENA
SRP160449: Pre-clinical evaluation of cysteamine bitartrate as a therapeutic agent for mitochondrial respiratory chain disease (worm)
DBHI, Children's Hospitla of Philadelphia
0 runs in ENA
SRP161795: Comparison of gene expression in the long-lived hsb-1 mutant and hsf-1 overexpression C. elegans strains
DCM&B, University of Michigan
0 runs in ENA
SRP162405: Defective expression of mitochondrial, histone and vesicle genes in a C. elegans SMA model
SRP164932: Quantitative Analysis of Worms after P. aeruginosa Infection
State Key Laboratory for Conservation and Utilization of Bio-resources in Yunnan, Yunnan University
0 runs in ENA
SRP165209: RNA sequencing of cell-specific profile of AVK
David Miller lab, Cell and Developmental Biology, Vanderbilt University
0 runs in ENA
SRP165288: A multi-parent recombinant inbred line population of Caenorhabditis elegans
Wageningen University
0 runs in ENA
SRP166156: Comparison of Pseudomonas responsive gene expression after histone methyltransferase RNAi in C. elegans
Suite 308, Program in Molecular Medicine, UMASS Medical School
0 runs in ENA
SRP166157: Comparison of R24 responsive gene expression after histone methyltransferase RNAi in C. elegans
Suite 308, Program in Molecular Medicine, UMASS Medical School
0 runs in ENA
SRP166158: Comparison of heat responsive gene expression after histone methyltransferase RNAi in C. elegans
Suite 308, Program in Molecular Medicine, UMASS Medical School
0 runs in ENA
SRP166194: Maternal and zygotic gene regulatory effects of endogenous RNAi pathways in C. elegans
The Institute of Molecular Biology (IMB)
0 runs in ENA
SRP167129: Loss of mitochondrial proline catabolism depletes FAD, impairing sperm function, and male reproductive advantage
SRP167691: RNA-seq data for: A conserved mito-cytoplasmic translational balance links two longevity pathways
SRP168250: An unstructured MET-2/SETDB1 cofactor ensures H3K9me2, focus formation and perinuclear anchoring [RNA-seq]
Friedrich Miescher Institute
0 runs in ENA
SRP168626: RNA sequencing to identify NPR-8-regulated genes in C. elegans defense against pathogen infection
SRP169111: Binding of an X-specific condensin correlates with a reduction in active histone modifications at gene regulatory elements
Sevinc Ercan, Biology, New York University
0 runs in ENA
SRP169815: RNASeq of C. elegans exposed to silver (Ag) or silicon dioxide (SiO2) nanoparticles
McGill University
0 runs in ENA
SRP169961: Transcriptome analysis of a multipotent progenitor and its differentiated sister in C. elegans
Virginia Commonwealth University
0 runs in ENA
SRP170618: DAF-16 stabilizes the aging transcriptome and is activated in mid-aged C. elegans to cope with internal stress
National Institute of Biological Sciences
0 runs in ENA
SRP170634: Transcriptome of a long-lived mutant nematode with severe mitochondrial deficiency
SRP170937: High-throughput transcriptome sequencing reveals extremely high doses of ionizing radiation-response genes in Caenorhabditis elegans
Southern Medical University
0 runs in ENA
SRP171041: Transcriptome analysis of extruded germline from wild-type C. elegans at different temperatures and under inhbition of germ stem cell proliferation
Vilchez Lab, CECAD - Cluster of Excellence
0 runs in ENA
SRP171218: Regulation of Lifespan by Neural Excitation and REST [Day 10]
SRP171604: Characterization of the genes that were regulated by feeding with CBM 588
SRP171641: Bacterial diet and weak cadmium stress affect the age-specific survival rates of Caenorhabditis elegans and its resistance against severe stressors
Prof. Paul, Institute of Zoophysiology, University of Muenster
14 runs in ENA
SRP172490: Transcriptomic profiling of C. elegans hermaphrodites and feminized (fem-1) individuals following a 2 hour interaction with males or without a male interaction
Stanford University
0 runs in ENA
SRP172706: RNA-seq transcriptome profiling of hybrid (hawaii mother and bristol father) C. elegans H3K27me3 M+P+ vs. M+P- hermaphrodite germlines
MCD Biology, UC Santa Cruz
0 runs in ENA
SRP172974: Maternal ribosomes are sufficient for tissue diversification during embryonic development in C. elegans
STANFORD UNIVERSITY
0 runs in ENA
SRP173196: A Persistence Detector for Metabolic Network Rewiring in an Animal
Walhout, Program in Systems Biology, Univesity of Massachusetts Medical School
A Persistence Detector for Metabolic Network Rewiring in an Animal. (Bulcha .. Walhout, 2019)
0 runs in ENA
SRP173212: Transcriptional redirection of activated SKN-1/NRF2 abates the negative metabolic outcomes of a perceived pathogen infection
SRP173463: Loss of miR-83 extends lifespan and affects target gene expression in an age-dependent manner in Caenorhabditis elegans
School of Life Sciences, University of Science and Technology of China
0 runs in ENA
SRP173638: Comprehensive Transcriptome Analysis of Cerebral Cavernous Malformation Across Multiple Species and Genotypes
Center for Research Informatics, The University of Chicago
0 runs in ENA
SRP173805: Neuronal Small RNAs Control Behavior Transgenerationally
Oded Rechavi lab, Neurobiology, Tel Aviv University
Neuronal Small RNAs Control Behavior Transgenerationally. (Posner .. Rechavi, 2019)
0 runs in ENA
SRP174025: RNA-seq: WT under proteotoxic stress conditions
Hoppe Lab, Institut für Genetik, CECAD Cologne and Institute for Genetics
0 runs in ENA
SRP174479: Gene expression profile of N2 and HPX-2 mutant C.elegans strains when exposed to E.coli and E.faecalis
Danielle Garsin, Microbiology and Molecular Genetics, University of Texas Health Science Center at Houston
Heme peroxidase HPX-2 protects Caenorhabditis elegans from pathogens. (Liu .. Garsin, 2019)
0 runs in ENA
SRP178555: Multi-omics and genome-scale modeling reveal a metabolic shift during C. elegans ageing
Bioinformatics, The Babraham Institute
0 runs in ENA
SRP179060: C. elegans cnd-1/NeuroD1 functions with the Hox gene ceh-13/labial to control multiple genes required for nervous system development and function
Molecular and Cellular Biology, Kennesaw State University
HASH(0x6e0bec8) (Aquino-Nunez .. Hudson, 2020)
0 runs in ENA
SRP181892: Small RNA-mediated transgenerational silencing of histone genes impairs fertility in piRNA mutants (RNA-Seq)
mechanisms of epigenetic inheritance, Development and stem cell biology, Institut Pasteur
0 runs in ENA
SRP182100: A Myt1 family transcription factor defines neuronal fate by repressing non-neuronal genes
Stanford University
0 runs in ENA
SRP182604: Expression analysis of C. elegans eat-2, eat-2; acs-22 and eat-2; pmk-1; acs-22 mutants
Di Chen lab, Model Animal Research Center, Nanjing University
0 runs in ENA
SRP182605: Expression analysis of C. elegans wild-type N2, eat-2, acs-20 and eat-2; acs-20 mutants
Di Chen lab, Model Animal Research Center, Nanjing University
0 runs in ENA
SRP183504: Simple Nutrients Bypass the Requirement for HLH-30 in Coupling Lysosomal Nutrient Sensing to Survival.
SRP184487: Steroids originating from bacterial bile acid degradation affect Caenorhabditis elegans and indicate potential risks for the fauna of manured soils
Prof. Paul, Institute of Zoophysiology, University of Muenster
10 runs in ENA
SRP185453: RNA memories: trans-generational epigenetic inheritance of RNA-mediated gene silencing
SRP185898: Caenorhabditis elegans Transcriptome analysis on exposure to E. faecalis
Indian Institute of Science
0 runs in ENA
SRP185924: RNA-seq using the Cel-Seq2 method, of wild type and 35-polyglutamine (polyQ35) expressing C. elegans worms treated with RNAi toward anc-1, or left untreated (EV) gene expression profiles.
Ehud Cohen, Biochemistry and Molecular Biology, The Hebrew University of Jerusalem
0 runs in ENA
SRP186006: HLH-30/TFEB is a master regulator of reproductive quiescence
Bioinformatics, Max Planck Institute for Biology of Ageing
0 runs in ENA
SRP186354: Transcriptomics-based screening identifies pharmacological inhibition of Hsp90 as a means to defer aging
Karolinska Institute
0 runs in ENA
SRP186357: Wounding triggers MIRO-1 dependent mitochondrial fragmentation that accelerates epidermal wound closure through oxidative metabolic signaling
Zhejiang University
0 runs in ENA
SRP186435: C. elegans CB4856 genome project using long-read sequencing
Seoul National University
0 runs in ENA
SRP187223: Caenorhabditis elegans Transcriptome analysis on exposure to P. aeruginosa
Indian Institute of Science
0 runs in ENA
SRP187392: Caenorhabditis elegans Transcriptome analysis on exposure to C. neoformans
Indian Institute of Science
0 runs in ENA
SRP187714: NFYB-1 regulates mitochondrial function and longevity via lysosomal prosaposin
Bioinformatics, Max Planck Institute for Biology of Ageing
0 runs in ENA
SRP187904: The transcription factors TFEB and TFE3 link the FLCN-AMPK signaling axis to innate immune response and pathogen resistance [RNA-seq]
Bourque Lab, McGill University
0 runs in ENA
SRP188146: Caenorhabditis elegans Transcriptome
Georgia Institute of Technology
0 runs in ENA
SRP188258: A beneficial genomic rearrangement creates multiple versions of calcipressin in C. elegans
Georgia Institute of Technology
0 runs in ENA
SRP188887: X chromosome domain architecture regulates Caenorhabditis elegans lifespan but not dosage compensation [RNA-seq]
SRP189234: The C. elegans SET-2 histone methyltransferase maintains germline fate by preventing progressive transcriptomic deregulation across generations
SRP189364: Analysis of mRNA expression changes caused by mdt-15(tm2182) mutation at 15oC and 25 oC
SRP189714: Transcriptome analysis of mir-1-deficient and ins-1-deficient Caenorhabditis elegans
SRP192010: RNA-seq for sf3b-1 alleles
Modelling human diseases in C. elegans, Cancer and Human Molecular Genetics, IDIBELL
0 runs in ENA
SRP192875: Effects of cadmium and integrator complex knockdown on gene expression and mRNA splicing
University of Saskatchewan
0 runs in ENA
SRP193939: Caenorhabditis elegans Transcriptomic analysis upon starvation for 8 hours
Indian Institute of Science
0 runs in ENA
SRP194189: The transcriptomic response to albendazole (ABZ), mebendazole (MBZ), thiabendazole (TBZ), oxfendazole (OxBZ) and fenbendazole (FBZ) in the C. elegans strain CB3474 ben-1(e1880)III
Faculty Veterinary Medicine, University of Calgary
0 runs in ENA
SRP194257: Caenorhabditis elegans pathogenic learning confers multigenerational pathogen avoidance
Princeton University
0 runs in ENA
SRP194924: Stage-specific combinations of opposing poly(A) modifying enzymes guide gene expression during early oogenesis
SRP195497: Identification of proteins and miRNAs that specifically bind an mRNA in vivo [total RNA]
SRP195779: mRNA sequencing time course of C. elegans samples at time point 0 hours until time point 15 hours at 25 degree.
SRP195783: mRNA-seq time course of C. elegans sampled from 5h until 48h at 25 degrees
SRP197111: Epigenetic bookmarking of H2S exposure in Caenorhabditis elegans
Biochemistry, University of Washington
0 runs in ENA
SRP197132: Bulk RNA sequencing of cell specific profile of RIS
David M Miller III, Cell and Developmental Biology, Vanderbilt University
0 runs in ENA
SRP197305: Innate immunity in the C. elegans intestine is programmed by a neuronal regulator of AWC olfactory neuron development
SRP198494: Identification of the m6Am Methyltransferase PCIF1 Reveals the Location and Functions of m6Am in the Transcriptome.
SRP199177: The transcriptional coactivator CBP/p300 is an evolutionarily conserved node that promotes longevity in response to mitochondrial stress [C. elegans]
SRP199407: C. elegans ENDU-2 RNA binding profile
University of Freiburg
0 runs in ENA
SRP199676: Ferritin regulation upon ETS-4/SPDEF depletion promotes cold survival in C. elegans
Rafal Ciosk group, Department of Biosciences, University of Oslo
0 runs in ENA
SRP199933: N2, daf-1(m40), and daf-1(m40);daf-3(mgDf90) adult, gravid hermaphrodites
Rosa Serra, CDIB, University of Alabama at Birmingham
0 runs in ENA
SRP201227: The transcriptional response of C. elegans to statins: general and p38 dependent responses
SRP201313: Granulin expression effect on day 1 adults
Neurogenetics, Psychiatry and Neurology, UCLA
90 runs in ENA
SRP201545: Neuronal TORC1 modulates longevity via AMPK and cell nonautonomous regulation of mitochondrial dynamics in C. elegans
SRP201610: RNA Sequencing of CTRL and Heat Stressed C. elegans [RNA-seq]
SRP201630: Caenorhabditis elegans sequencing
UC Santa Cruz
16 runs in ENA
SRP212119: LSM2-8 and XRN-2 contribute to the silencing of H3K27me3 marked genes through targeted RNA decay II
Friedrich Miescher Institute
0 runs in ENA
SRP212191: mRNA sequencing time course of C. elegans samples at time point 1 hours until time point 16 hours at room temperature
Friedriche Miescher Institute for Biomedical Research (FMI)
0 runs in ENA
SRP213442: Epimutations in Caenorhabditis elegans mutation accumulation lines
Peter Sarkies lab - MRC London Institute of Medical Sciences/Imperial College London
0 runs in ENA
SRP214438: The C. elegans ortholog of human selenium binding protein 1 is a pro-aging factor protecting against selenite toxicity
SRP215493: RNAi pathways repress reprogramming of C. elegans germ cells during heat stress
SRP215886: meg-3 meg-4 upregulate endogenous sRNAs targeting RNAi genes and downregulate their mRNAs
SRP215971: Oligosaccharyl transferase that maintains ER homeostasis enhances immunity via up-regulating p38 MAP kinase signaling in C. elegans
SRP216281: Expression data from the complex I mutant gas-1 (fc21) C. elegans worms in comparison to wildtype N2 Bristol worm and under the inluence combination drug therapy
Children's Hospitla of Philadelphia
0 runs in ENA
SRP216603: RNA-seq analysis in syp-2::AID and N2 controls with and without auxin treatment (4 hours at 4 mM concentration)
MRC London Institute of Medical Sciences (LMS)
0 runs in ENA
SRP217082: Caenorhabditis elegans Transcriptome or Gene expression
University of Macau
0 runs in ENA
SRP218022: RNA-seq profiling of BAG neurons in C. elegans npr-1 and npr-1;arcp-1 animals
SRP218433: DAF-16/FOXO requires Protein Phosphatase 4 to drive the transcription of stress resistance and longevity promoting genes
Karolinska Institute
0 runs in ENA
SRP218832: Transcriptional profiling of Caenorhabditis elegans and Caenorhabditis briggsae before and after heat shock
SRP218876: Molecular topography of an entire nervous system
Cell and Developmental Biology, Vanderbilt University
0 runs in ENA
SRP218889: Transcriptome of the nematode Caenorhabditis elegans infected by Bacillus thuringiensis
Schulenburg Group, Evolutionary Ecology and Genetics, Zoological Institute, Christian-Albrechts-Universitaet zu Kiel
0 runs in ENA
SRP218904: Identification and characterization of differentially expressed genes in Caenorhabditis elegans in response to pathogenic and nonpathogenic Stenotrophomonas maltophilia
University of Nebraksa-Lincoln
12 runs in ENA
SRP219531: RNA-seq: Loss of a heterochromatin anchor rescues altered genome organization and EDMD muscle defects triggered by a laminopathy mutation
SRP220245: RNA-seq for UV irradiated C. elegans
Institute for Genome Stability in Aging and Disease, CECAD Research Center
0 runs in ENA
SRP221060: RNA Sequencing of C elegans control and mutant worms after 24 hour P.aeruginosa infection
SRP221359: Repression of an activity-dependent autocrine insulin signal is required for sensory neuron development in C. elegans
SRP222977: FOXO and HSF1 rejuvenate immunity via positive feedback regulation of insulin/IGF-1 signaling
Room 4203, Life Sciences, KAIST
0 runs in ENA
SRP223301: Temporal transcriptional profiling of in vivo cellular reprogramming and transorganogenesis in C. elegans
Rothman, MCDB, University of California Santa Barbara
0 runs in ENA
SRP223375: C. elegans LPIN-1 moderates lifespan-shortening effects of dietary glucose via maintaining ?-6 polyunsaturated fatty acids
SRP223634: VRK-1 Extends Lifespan by Activation of AMPK via Phosphorylation
Room 4203, Life Sciences, KAIST
0 runs in ENA
SRP223768: Organism Dual RNA-Seq Reveals the Control on both Pathogen and Host through BarA/UvrY of Vibrio parahaemolyticus for Successful Infection
Zhang Wenwen
0 runs in ENA
SRP223779: A Tudor-domain containing protein, SIMR-1, mediates silencing of piRNA target mRNAs by the Mutator Complex
SRP223893: Characterization of the transcriptional response to Orsay RNA1
SRP224472: RNA-seq of C elegans during transient heatshock
University of Iowa
0 runs in ENA
SRP224605: Developmental ROS targets histone methylation to individualize stress resistance and lifespan
University of Michigan
0 runs in ENA
SRP226092: Caenorhabditis elegans co-culture with native microbiome Raw sequence reads
Baylor College of Medicine
0 runs in ENA
SRP226515: Neuronal transcriptome analyses reveal novel neuropeptide modulators of excitation and inhibition imbalance in C. elegans
SRP228537: Recruitment of mRNAs to P granules by gelation with intrinsically-disordered proteins (RNAseq datasets)
SRP228538: Recruitment of mRNAs to P granules by gelation with intrinsically-disordered proteins (RNAseq and ribosome profiling)
SRP228777: Caenorhabditis elegans RNA-seq
Animal Science, Guangdong Academy of Agricultural Sciences
0 runs in ENA
SRP230370: Four glial cells regulate ER stress resistance and longevity via neuropeptide signaling
University of California, Berkeley
0 runs in ENA
SRP231447: mRNA-seq of wild-type(N2), hlh-11 knock-out(KO) and hlh-11 over-expression(OE) worms
PKU
0 runs in ENA
SRP233296: mRNA-seq of worms and the mitochondrial unfolded protein response (UPRmt)
Peking University
0 runs in ENA
SRP233481: Evolutionarily Conserved Regulation of Immunity by the Splicing Factor RNP-6/PUF60
SRP234406: Widespread roles for piRNAs and WAGO-class siRNAs in shaping the germline transcriptome of Caenorhabditis elegans
SRP234452: Slo2 potassium channel function depends on a SCYL1 protein
SRP234874: mRNA sequencing time course of C. elegans samples at time point 1 hours until time point 24 hours at 25 degrees [N2 control]
SRP235050: Transcriptome of C. elegans upon alteration of 5-HT
University of Iowa
0 runs in ENA
SRP235168: RNA-seq of C elegans with serotonin treatment
University of Iowa
0 runs in ENA
SRP235274: Transcriptional analysis effect of excess sugar and lipid on the growth and development of Caenorhabditis elegan
College of Food Science and Nutritional Engineering, China Agricultural University
HASH(0x77f3db0) (Wang .. Zhang, 2020)
0 runs in ENA
SRP235292: mRNA-seq of C. elegans starved L1 progeny of parents fed empty vector, daf-2, or pitr-1 RNAi
SRP237709: Adult C. elegans XBP-1s dependent transcriptional changes in the nervous system and intestine
MRC Laboratory of Molecular Biology
0 runs in ENA
SRP238530: CDK1-formin signal confers microvillar effacement by an attaching and effacing (A/E) pathogen
National Cheng Kung University
0 runs in ENA
SRP239115: C. elegans mRNA-seq of presynaptic and somatic mRNAs
Princeton University
0 runs in ENA
SRP241823: Caenorhabditis elegans ADAR editing and the ERI-6/7/MOV10 RNAi pathway silence endogenous viral elements and LTR retrotransposons
SRP241835: The basic-helix-loop-helix transcription factor ngn-1/neurogenin activates transcription of multiple terminal selector transcription factors in the Caenorhabditis elegans nervous system
SRP241973: Translational profiling reveals that mRNAs encoding cuticle collagens are translationally repressed upon nsun-1 knockdown
Markus Schosserer, Department of Biotechnology, BOKU - University of Natural Resources and Life Sciences Vienna
HASH(0x7462f78) (Heissenberger .. Schosserer, 2020)
0 runs in ENA
SRP242209: RNAseq of C. elegans grown with different bacteria isolates
McGill University
0 runs in ENA
SRP242244: Defective axon guidance links H3K4 deregulation to neurodevelopment disorder
Salcini, BRIC, Copenhagen University
0 runs in ENA
SRP242469: Maternal reprogramming of histone methylation regulates germline versus somatic cell fates [RNA-seq]
435, Cell Biology, Emory University
0 runs in ENA
SRP242662: The nucleosome remodeling and deacetylase (NuRD) complex mediates the mitochondrial unfolded protein response and longevity in C. elegans
Institute of genetics and developmental biology
0 runs in ENA
SRP243724: Insights into the involvement of spliceosomal mutations in myelodysplastic disorders from an analysis of SACY-1/DDX41 in Caenorhabditis elegans
SRP243896: RNA-seq transcriptome profiling of C. elegans mutants defective in IL-17 signaling
SRP244263: Genome-wide expression analysis of C. elegans nematodes after feeding RNAi impairment of the transcription factors lin-32 and hlh-2
SRP244671: Next Generation Sequencing for Transcriptomes Analysis for LAG-1 time course by auxin treatment.
Tim Schedl, Genetics, Washington University School of Medicine
0 runs in ENA
SRP244672: Next Generation Sequencing for Transcriptomes Analysis in GLP-1 Notch receptor ON and OFF genetic background
Tim Schedl, Genetics, Washington University School of Medicine
0 runs in ENA
SRP246334: Total, polysome and monosome RNAseq of Caenorhabditis elegans strains ppp-1(wrm10), ppp-1(wrm15) and wild type
Max Planck Institute for Biology of Ageing
0 runs in ENA
SRP246870: High-resolution mapping of regulatory element interactions and genome architecture using ARC-C [RNA-Seq]
The Gurdon Institute, University of Cambridge
0 runs in ENA
SRP246887: NHR-8 regulated P-glycoproteins uncouple xenobiotic stress resistance from longevity in chemosensory C. elegans mutants
Max Planck Institute for Biology of Ageing
0 runs in ENA
SRP246903: H3.3 nucleosome assembly mutants display a late-onset maternal effect
Koch Institute
0 runs in ENA
SRP248606: A Small-RNA-Mediated Feedback Loop Maintains Proper Levels of 22G-RNAs in C. elegans
University of Southern California
0 runs in ENA
SRP249322: Gene expression profile of C. elegans biogenic amine synthesis mutants
Rongo Lab, Genetics, Waksman Institute / Rutgers University
0 runs in ENA
SRP249821: RNA polymerase II CTD S2P is dispensable during embryogenesis but regulates the developmental diapause in C. elegans [RNA-seq]
François Bachand's lab, Biochemistry and functional genomics, Sherbrooke University
HASH(0x6be6f78) (Cassart .. Hermand, 2020)
0 runs in ENA
SRP250832: Analyses of CED-3 caspase and PMK-1 p38 MAPK in gene regulation in C elegans
SRP251098: Germline inherited small RNAs facilitate the clearance of untranslated maternal mRNAs in C. elegans embryos (RNA-seq)
Mechanisms of Epigenetic Inheritance, Development and stem cell biology, Institut Pasteur
0 runs in ENA
SRP251352: Translational adaptation to heat stress is mediated by 5-methylcytosine RNA modification in Caenorhabditis elegans
Miska Lab, The Gurdon Inst., University of Cambridge
0 runs in ENA
SRP251689: Lifespan and healthspan benefits of FW1256, a novel hydrogen sulfide donor compound, in C. elegans are independent from effects downstream of eat-2 mutation
Ageing Research Laboratory, Science/Biochemistry, Yale-NUS College/National University of Singapore
0 runs in ENA
SRP251725: Genome-wide profiling of age-dependent changes in gene expression between L4 larvae and Day 6 adult Caenorhabditis elegans
SRP252067: RNA sequencing of nas-38(ok4307), nas-38(tm2655) and wild type C. elegans during L4 lethargus using NextSeq500
Bringmann, Biology, University of Marburg
0 runs in ENA
SRP252085: Ancestral function of Inhibitors-of-kappaB regulates Caenorhabditis elegans development (RNA-Seq)
SRP252379: Chromatin remodeling and the acute behavioral response to alcohol
Virginia Commonwealth University
0 runs in ENA
SRP252424: Muscleblind Splicing Factor Regulates Longevity Through p38 MAPK Signaling
University of Helsinki
0 runs in ENA
SRP252561: RNA m6A methylation of 3' splice site prevents binding of U2AF35 to inhibit splicing
Department of Molecular Biology, University of Geneva
HASH(0x5bed2b0) (Mendel .. Pillai, 2021)
0 runs in ENA
SRP252742: Cooperation between Caenorhabditis elegans COMPASS and condensin in germline chromatin organization
Laboratoire de Biologie et Modélisation de la Cellule, ENS de Lyon
HASH(0x7063c90) (Herbette .. Palladino, 2020)
0 runs in ENA
SRP253699: mRNA sequencing time course of C. elegans samples at time point 1 hours until time point 24 hours at 25 degree [blmp-1(tm548) mutant]
SRP253718: The zinc-finger protein OEF-1 stabilizes patterns of activating and silencing modifications in the C. elegans germ line
Reinke lab, Genetics, Yale University School of Medicine
0 runs in ENA
SRP253802: Transcriptome changes during the initiation and progression of Duchenne Muscular Dystrophy in C. elegans
Arizona State University
0 runs in ENA
SRP254903: mRNA-seq time course of C. elegans sampled at and after release from dauer starvation at 25 degrees
SRP255188: poly(UG)-tailed RNAs in Genome Protection and Epigenetic Inheritance [RNA-Seq]
Kennedy, Genetics, Harvard Medical School
0 runs in ENA
SRP255758: Regulation of the transcriptional response to mechanical trauma by vhp-1
Molecular Biology, UT Southwestern Medical Center
0 runs in ENA
SRP257794: The RNA Polymerase II subunit RPB-9 directs transcriptional elongation at piRNA loci in C. elegans
Eric Miska Lab, The Gurdon Institute, University of Cambridge
0 runs in ENA
SRP258707: Three Rules Explain Transgenerational Small RNA Inheritance in C. elegans
Oded Rechavi, Neurobiology, Tel-Aviv University
0 runs in ENA
SRP259946: RNA Sequencing of unc-30(ok613) and wild type (WT) N2 C elegans
Aballay Alejandro Lab, Department of Molecular Microbiology and Immunology, Oregon Health & Science University
0 runs in ENA
SRP260053: RNA Sequencing of unc-30(ok613) and wild type (WT) N2 C. elegans in Pseudomonas aeruginosa (PA14) infection
Aballay Alejandro Lab, Department of Molecular Microbiology and Immunology, Oregon Health & Science University
0 runs in ENA
SRP260162: Gene expression in adult Caenorhabditis elegans daf-7 null mutants
SRP260239: mRNA sequencing of telomere-binding mutants in C. elegans
Institute of Molecular Biology (IMB)
0 runs in ENA
SRP260777: Actin polymerization and ESCRT trigger SYX-2-facilitated EFF-1 recruitment to promote membrane repair in C. elegans
Zhejiang University
0 runs in ENA
SRP260797: The Phenotypic and Genotypic Response of the Caenorhabditis elegans nematode to Background and Below-Background Radiation Levels
New Mexico State University
0 runs in ENA
SRP260799: Transcriptomic analysis of C. elegans infected with Myzocytiopsis humicola or treated with its extract
Imperial College London
0 runs in ENA
SRP264727: Caenorhabditis elegans AF4/FMR2 family homolog affl-2 regulates heat shock induced gene expression
Sternberg, Biology and Biological Engineering, California Institute of Technology
83 runs in ENA
SRP265060: Failure to maternally reprogram histone methylation causes developmental delay due to germline transcription in somatic tissues
435, Cell Biology, Emory University
0 runs in ENA
SRP265098: Transcriptome analysis of zcIs13 and zcIs13; Punc-119_ds-fzo-1 RNAi in Caenorhabditis elegans
R1524, Institute of Molecular Medicine, National Taiwan University
0 runs in ENA
SRP265767: CREB regulates Reproductive Aging through Hedgehog/Patched Signaling
Princeton University
6 runs in ENA
SRP265812: Protease-mediated processing of Argonaute proteins controls small RNA association [RNA-Seq]
Grosshans, FMI
0 runs in ENA
SRP265826: Protective microbes alter the transcriptional response of Caenorhabditis elegans nematodes to pathogenic infection
Kayla King, Department of Zoology, University of Oxford
0 runs in ENA
SRP266031: C. elegans methionine/S-adenosylmethionine cycle activity is sensed and adjusted by a nuclear hormone receptor: RNA-seq dataset 2
Walhout, Program in Systems Biology, University of Massachusetts Medical School
0 runs in ENA
SRP266179: A molecular mechanism to regulate neural-specific A-to-I editing during development
Hundley, Biology, Indiana University, Bloomington
0 runs in ENA
SRP266192: Arginine methylation promotes siRNA-binding specificity for a spermatogenesis-specific isoform of the Argonaute protein CSR-1
Phillips, Biological Sciences, University of Southern California
0 runs in ENA
SRP266908: Defining the transcriptomic fingerprints of benzo[a]pyrene exposure in Caenorhabditis elegans
Analytical, Environmental and Forensic Sciences, King's College London
0 runs in ENA
SRP267673: RNA-seq profiling of C. elegans O2-sensing neurons at different age and activity states
Busch Lab, Centre for Discovery Brain Sciences, University of Edinburgh
HASH(0x59823d0) (Li .. Busch, 2020)
0 runs in ENA
SRP267891: RNA-seq Analysis of wildtype (N2) C. elegans at the L4 stage on diets from the laboratory environment and natural environment
Curran, Davis School of Gerontology, University of Southern California
0 runs in ENA
SRP268496: Transcriptome Analysis of Caenorhabditis elegans Lacking Heme Peroxidase SKPO-1 Reveals an Altered Response to Enterococcus faecalis
Host-Microbe Co-Metabolism, Medical Research Council
0 runs in ENA
SRP268987: RNA-seq of C. elegans glp-1 hermaphrodites with and without sexual interactions with males
Stanford University
0 runs in ENA
SRP271783: The precursor of PI(3,4,5)P3 alleviates aging by activating daf-18(Pten) and independent of daf-16
SRP272453: Two isoforms of the essential C. elegans Argonaute CSR-1 differentially regulate sperm and oocyte fertility through distinct small RNA classes
Claycomb, Molecular Genetics, University of Toronto
0 runs in ENA
SRP273442: Translation and codon usage regulate Argonaute slicer activity to trigger germline small RNA biogenesis [RNA-Seq]
Mechanisms of Epigenetic Inheritance, Development and stem cell biology, Institut Pasteur
0 runs in ENA
SRP273738: DREAM represses distinct targets by cooperating with different THAP domain proteins [RNA-seq]
Julie Ahringer, University of Cambridge
0 runs in ENA
SRP274307: The acid stress transcriptome of C. elegans
Institute of Oceanology, Chinese Academy of Sciences
0 runs in ENA
SRP276330: RNA-seq on C. elegans
tsinghua university
0 runs in ENA
SRP276960: Gene expression regulated by let-607 RNAi in C. elegans
Chongqing university
0 runs in ENA
SRP277053: Atf-6 regulates lifespan through ER-mitochondrial calcium homeostasis
28-7 Therapeutics
Atf-6 Regulates Lifespan through ER-Mitochondrial Calcium Homeostasis. (Burkewitz .. Mair, 2020)
0 runs in ENA
SRP277056: A secreted endoribonuclease ENDU-2 from the soma protects germline immortality in C. elegans
University of Freiburg
0 runs in ENA
SRP277540: Gonad mRNA sequencing of pie-1 mutants in C. elegans
University of Massachusetts Medical School
0 runs in ENA
SRP277561: RNA seq of NuRD complex mutants and piRNA pathway mutants
University of Massachusetts Medical School
0 runs in ENA
SRP277744: Peroxisomal retrograde signaling in C. elegans
IBS Center for Genomic Integrity
Reduced peroxisomal import triggers peroxisomal retrograde signaling. (Rackles .. Rolland, 2021)
0 runs in ENA
SRP277817: Comparative Transcriptomics of heads and tails between Steinernema carpocapsae and Caenorhabditis elegans
Mortazavi, Developmental and cell biology, University of California, Irvine
0 runs in ENA
SRP278131: Transcriptome profiling (Whole RNA sequencing) to study the funciton of clk-2 in NMD pathway in C.elegans
Rafal Ciosk group, Department of Biosciences, University of Oslo
0 runs in ENA
SRP278203: Two parallel pathways recruit the H3K9me3 HMT in somatic cells, requiring the Argonaut NRDE-3, or the MBT-domain protein, LIN-61 (RNA-seq)
Friedrich Miescher Institute
0 runs in ENA
SRP279158: Transgenerational inheritance of increased mtDNA triggers mitochondrial UPR and modulates aging [WT vs. TGQ]
Ye Tian Lab, State Key Laboratory of Molecular Developmental Biology, Institute of Genetics and Developmental Biology
0 runs in ENA
SRP281831: RNA-seq data for: Reduced ech-6 Expression Attenuates Fat-induced Premature Aging in C. elegans
Houtkooper's lab, Laboratory Genetic Metabolic Disease, Amsterdam UMC
0 runs in ENA
SRP283883: FHOD formin and SRF promote striated muscle development through separate pathways in C. elegans
107 Weiskotten Hall, Cell and Developmental Biology, SUNY Upstate Medical University
0 runs in ENA
SRP284442: A pathogen branched-chain amino acid catabolic pathway subverts host survival by impairing energy metabolism and the mitochondrial UPR
University of Texas Arlington
0 runs in ENA
SRP285123: Metformin rescues Parkinsons disease features induced by defective branched chain amino acid metabolism
Princeton University
0 runs in ENA
SRP285776: RNA-Sequencing used to identify the targets of NHR-49, a transcription factor that acts in distinct tissues to promote longevity versus immunity
University of Pittsburgh
0 runs in ENA
SRP285937: The SDHB Arg230His mutation causing familial paraganglioma alters glycolysis in a new Caenorhabditis elegans model
HAS-SE Momentum Hereditary Endocrine Tumour Syndromes Research Group, Hungarian Academy of Sciences and Semmelweis University, Semmelweis University
HASH(0x772a650) (Saskői .. Takács-Vellai, 2020)
0 runs in ENA
SRP287705: Neuronal circular RNA profile in C. elegans
Okinawa Institute of Science and Technology, Graduate School
0 runs in ENA
SRP287729: circRNA comparison between N2 and fust-1(csb21)
Okinawa Institute of Science and Technology, Graduate School
0 runs in ENA
SRP291463: Transcritome profiling of plp-1-mutant Caenorhabditis elegans
Department of Biotechnology, Indian Institute of Technology Madras
HASH(0x6c3ac10) (Vishnupriya .. Subramaniam, 2020)
0 runs in ENA
SRP292803: A novel gene-diet interaction promotes organismal lifespan and host protection during infection via the mitochondrial UPR
University of Texas Arlington
0 runs in ENA
SRP293738: Using Auxin-inducible-degradation System to Interrogate Tissue-specific Transcriptional Programs of HSF-1 in Reproduction and Heat Shock Response. [HS response]
Oklahoma Medical Research Foundation
0 runs in ENA
SRP293791: Using Auxin-inducible-degradation System to Interrogate Tissue-specific Transcriptional Programs of HSF-1 in Reproduction and Heat Shock Response. [Germline - Timecourse]
Oklahoma Medical Research Foundation
0 runs in ENA
SRP293847: mRNAseq of wild type and ets-5 mutant C. elegans BAG neurons
SRP294451: Whole genome RNA sequencing of wild type and nath-10(icb99 and icb102) alleles
Barkoulas, Faculty of Natural Sciences, Imperial College London
HASH(0x41dea40) (Hintze .. Barkoulas, 2021)
0 runs in ENA
SRP296805: Nuclear receptor NHR-49 promotes peroxisome proliferation to compensate for aldehyde dehydrogenase deficiency in C. elegans
Mak Lab, Division of Life Science, The Hong Kong University of Science and Technology
0 runs in ENA
SRP297460: Quality control of C. elegans piRNAs mediated by nontemplated nucleotide addition
The Ohio State University
0 runs in ENA
SRP300115: HFD induced lipid accumulation in C. elegans
Jinan University
0 runs in ENA
SRP301409: Transcriptional control of CALMODULIN by CAMTA regulates neural excitablity [RNA-seq]
Institute of Science and Technology Austria
0 runs in ENA
SRP302306: Structural recognition of the mRNA 3' UTR by PUF-8 restricts the lifespan of C. elegans
Hefei National Laboratory for Physical Sciences at the Microscale, School of Life Sciences, Division of Life Sciences and Medicine, University of Science and Technology of China
0 runs in ENA
SRP302585: Reprogramming an endogenous small RNA pathway for multiplexed and transgenerational gene silencing in C. elegans
Molecular Biology and Biochemistry, Rutgers University
0 runs in ENA
SRP303826: Transcriptomic Analysis of pnp-1 mutants in C. elegans
Troemel, Cell and Developmental Biology, University of California, San Diego
0 runs in ENA
SRP303841: An optimized ribodepletion approach for C. elegans RNA-sequencing libraries
Hammarlund, Genetics, Yale University
0 runs in ENA
SRP304863: RNA-seq of C. elegans dpy-23
National Cancer Center
0 runs in ENA
SRP305551: TRAP-Seq for learning and forgetting in the whole neuronal system of C. elegans.
Harvard University
0 runs in ENA
SRP308258: Asymmetric Segregation of the Nucleosome Remodeling and Deacetylase Complex during Asymmetric Cell Divisions
Prof. Guangshuo Ou, School of Life Science, Tsinghua university
0 runs in ENA
SRP308414: Chronic heat stress transcriptome in C. elegans
Florida Institute of Technology
0 runs in ENA
SRP308446: In Situ Structure of Intestinal Apical Surface Reveals Nanovilli on Microvilli
Prof. Guangshuo Ou, School of Life Science, Tsinghua university
0 runs in ENA
SRP308872: LSD1 functions through CoREST to maternally reprogram histone methylation
435, Cell Biology, Emory University
0 runs in ENA
SRP309442: Anti-aging effects of Vicatia thibetica de Boiss root extract on Caenorhabditis elegans and doxorubicin-induced mice via promoting collagen and stress resistance
East China University of Science and Technology
0 runs in ENA
SRP309974: Transgenerational bacterial sRNAs and epigenetic effectors of a pathogenic memory
Centro Interdisciplinario de Neurociencias de Valparaiso
0 runs in ENA
SRP310015: Impairing one sensory modality enhances another by reprogramming peptidergic circuits in Caenorhabditis elegans.
de Bono Lab, IST Austria
0 runs in ENA
SRP310412: Condensin DC spreads linearly and bidirectionally from recruitment sites to create loop-anchored TADs in C. elegans (RNA-seq)
Ercan, Biology, NYU
0 runs in ENA
SRP310708: Dietary thiols accelerate aging of C. elegans
NYU School of Medicine
0 runs in ENA
SRP311076: mter-4 C. elegans RNA-seq
Miska Lab, The Gurdon Inst., University of Cambridge
0 runs in ENA
SRP311166: Bulk RNA seq of sorted C. elegans neurons
Hammarlund, Genetics, Yale University
0 runs in ENA
SRP312615: Transcriptional Response to Dauer-Inducing Ascarosides in Late L1 in C. elegans
Sternberg, Biology and Bioengineering, California Institute of Technology
HASH(0x5c0bd58) (Cohen .. Sternberg, 2021)
0 runs in ENA
SRP314086: Critical contribution of 3' non-seed base pairing to the in vivo function of the evolutionarily conserved let-7a microRNA [RNA-seq]
Victor Ambros, Program of Molecular Medicine, Umass Medical School
0 runs in ENA
SRP314341: Expression data from ferulic acid treated C. elegans
SRP314522: Bisection of the X Chromosome Disrupts the Initiation of Chromosome Silencing during Meiosis in Caenorhabditis elegans
Hebrew University of Jerusalem
0 runs in ENA
SRP318012: Transcriptomic analysis of Caenorhabditis elegans treated with mitochondrial Na+/Ca2+ exchanger inhibitor CGP37157 vs untreated control.
SRP318375: High throughput RNA sequencing to identify genes up regulated by the transcription factor ATF-4
Joslin Diabetes Center
0 runs in ENA
SRP318629: S. aureus SH1000 vs Starvation transcriptional profiling (by RNA sequencing) in C. elegans and its dependence on HLH-30
University of Massachusetts Medical School
0 runs in ENA
SRP319256: S. aureus SH1000 vs Starvation transcriptional profiling (by RNA sequencing) in C. elegans and its dependence on NHR-49
University of Massachusetts Medical School
0 runs in ENA
SRP320368: Neuronal control of maternal provisioning in response to social cues
Susan Mango, Zell Biologie, Biozentrum, University of Basel
0 runs in ENA
SRP320460: Integrating transcriptomics of copper-exposed C. elegans
Southeast University
0 runs in ENA
SRP322433: Next Generation Sequencing Facilitates Quantitative Analysis of aged (Day10) and young (L4) C. elegans Transcriptomes
Xiao Lab, Department of Aging & Geriatric Research, uf
0 runs in ENA
SRP323540: Integrating transcriptomics of copper-exposed C. elegans (Phase L4)
Southeast University
0 runs in ENA
SRP324435: Global alternative splicing analysis of mutations in two new spliceosome components KIN17 and PRCC in C. elegans
Zahler Lab, MCD Biology, UC Santa Cruz
0 runs in ENA
SRP327647: Dual roles for piRNAs in promoting and preventing transgenerational gene silencing in C. elegans
Department of Biology, Colorado State University
0 runs in ENA
Release 18 - April 2023
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