Caenorhabditis brenneri - public RNASeq studies
Table of Contents
Analysed
SRP016006: Caenorhabditis sex-specific RNAseq
Haag Lab, Department of Biology, University of Maryland
Design: 2 conditions
| Condition | num. replicates | Developmental stage | Rna | Strain |
|---|---|---|---|---|
| L4 & adult females | 3 | L4 & adult females | poly-A RNA | PB2801 (WT) |
| L4 & adult males | 3 | L4 & adult males | poly-A RNA | PB2801 (WT) |
SRP042651: Comparative population genomics in 76 metazoan species (popphyl project)
University of Montpellier 2
Comparative population genomics in animals uncovers the determinants of genetic diversity. (Romiguier .. Galtier, 2014)
Combined Transcriptomic and Proteomic Analysis of the Posterior Salivary Gland from the Southern Blue-Ringed Octopus and the Southern Sand Octopus. (Whitelaw .. Cooke, 2016)
Link to the popphyl project
Design: 10 conditions
| Condition | num. replicates | Biomaterial provider | Geographic location | Latitude and longitude | Organism part |
|---|---|---|---|---|---|
| Costa Rica | 1 | Marie-Anne Felix - Institut de Biologie de l'Ecole Normale Superieure, 46 Rue d'Ulm, 75005 Paris, France | Costa Rica | 9.748917 -83.753428 | whole body (pool of siblings) |
| French Guyana Cacao | 1 | Marie-Anne Felix - Institut de Biologie de l'Ecole Normale Superieure, 46 Rue d'Ulm, 75005 Paris, France | French Guyana Cacao | 4.5489276 -52.491857 | whole body (pool of siblings) |
| French Guyana Cayenne | 1 | Marie-Anne Felix - Institut de Biologie de l'Ecole Normale Superieure, 46 Rue d'Ulm, 75005 Paris, France | French Guyana Cayenne | 2676224 -52.3269 | whole body (pool of siblings) |
| French Guyana Comte | 1 | Marie-Anne Felix - Institut de Biologie de l'Ecole Normale Superieure, 46 Rue d'Ulm, 75005 Paris, France | French Guyana Comte river at the cross with RN2 road | 4.592852 -52.356262 | whole body (pool of siblings) |
| Guadeloupe | 1 | Marie-Anne Felix - Institut de Biologie de l'Ecole Normale Superieure, 46 Rue d'Ulm, 75005 Paris, France | Guadeloupe | 16.265 -61.551 | whole body (pool of siblings) |
| India Allepey Kerala | 1 | Marie-Anne Felix - Institut de Biologie de l'Ecole Normale Superieure, 46 Rue d'Ulm, 75005 Paris, France | India Allepey Kerala | 9.4980667 76.3388484 | whole body (pool of siblings) |
| India Kanjirapally Kerala | 1 | Marie-Anne Felix - Institut de Biologie de l'Ecole Normale Superieure, 46 Rue d'Ulm, 75005 Paris, France | India Kanjirapally Kerala | 9.55951 76.79467 | whole body (pool of siblings) |
| India Poovar Kerala | 1 | Marie-Anne Felix - Institut de Biologie de l'Ecole Normale Superieure, 46 Rue d'Ulm, 75005 Paris, France | India Poovar Kerala | 8.3174333 77.0712972 | whole body (pool of siblings) |
| Reunion | 1 | Marie-Anne Felix - Institut de Biologie de l'Ecole Normale Superieure, 46 Rue d'Ulm, 75005 Paris, France | Reunion | -21.045555 55.6875 | whole body (pool of siblings) |
| Thailand Krabi | 1 | Marie-Anne Felix - Institut de Biologie de l'Ecole Normale Superieure, 46 Rue d'Ulm, 75005 Paris, France | Thailand Krabi nearby the Sai Tai beach | 8.0862997 98.9062835 | whole body (pool of siblings) |
Other
These studies are available in ENA, and the reads successfully align to our genomes.
They have not been included in our analysis for one of the following reasons:
Failed to meet minimal criteria for differential expression analysis, failure to pass data quality filters, or we were unable to interpret accompanying metadata.
SRP159488: Illumina sequencing of 4 Caenorhabditis species L4-early adult polyA+ 50bp PE RNAseq
Centre for Genomic Regulation (CRG)
1 run in ENA
SRP191526: Vertical transmission of RNA molecules in Caenorhabditis nematodes
Washington University in St. Louis School of Medicine
1 run in ENA
Release 18 - April 2023
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