Trichinella sp. T6
BioProject PRJNA257433 | Data Source University of Melbourne | Taxonomy ID 92179
About Trichinella sp. T6
One of the Trichinella genus of parasitic nematodes, the causative agents of trichinosis (also known as trichinellosis). The unnamed genotype Trichinella T6 is closely related to T. nativa and has been detected in several regions of Canada (British Columbia, Ontario, Manitoba) and the United States (Alaska, Montana, Idaho, Pennsylvania). Natural hybrids between Trichinella T6 and T. nativa have been detected in nature, suggesting a recent separation between the two taxa.
Genome Assembly & Annotation
Assembly
The genome of Trichinella sp. T6 was produced by the Gasser laboratory at the University of Melbourne, as part of the assembly and analysis of all 12 recognized Trichinella species (described in Korhonen et al (2016)).
Annotation
The gene predictions were made by the Gasser laboratory at the University of Melbourne.
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Key Publications
- Korhonen PK, Pozio E, La Rosa G, Chang BC, Koehler AV, Hoberg EP, Boag PR, Tan P, Jex AR, Hofmann A, Sternberg PW, Young ND, Gasser RB. Phylogenomic and biogeographic reconstruction of the Trichinella complex. Nat Commun, 2016;7():10513
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Assembly Statistics
| Assembly | T6_ISS34_r1.0, GCA_001447435.1 |
| Strain | ISS34 |
| Database Version | WBPS18 |
| Genome Size | 50,853,738 |
| Data Source | University of Melbourne |
| Annotation Version | 2016-05-WormBase |
Gene counts
| Coding genes | 15,241 |
| Gene transcripts | 19,518 |
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