Trichinella spiralis
BioProject PRJNA257433 | Data Source University of Melbourne | Taxonomy ID 6334
About Trichinella spiralis
The nematode Trichinella spiralis is a roundworm with an unsegmented body that is a parasite of swine. Trichinosis is a disease of swine that can pass to humans by the eating of undercooked pork, digestive juices from the stomach dissolve the capsule-like cyst and release the parasites. The larvae then penetrate into the intestine where they mature and mate.
There is 1 alternative genome project for Trichinella spiralis available in WormBase ParaSite: PRJNA12603
Genome Assembly & Annotation
Assembly
The genome of T. spiralis was produced by the Gasser laboratory at the University of Melbourne, as part of the assembly and analysis of all 12 recognized Trichinella species (described in Korhonen et al (2016)).
Annotation
The gene predictions were made by the Gasser laboratory at the University of Melbourne.
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Key Publications
- Korhonen PK, Pozio E, La Rosa G, Chang BC, Koehler AV, Hoberg EP, Boag PR, Tan P, Jex AR, Hofmann A, Sternberg PW, Young ND, Gasser RB. Phylogenomic and biogeographic reconstruction of the Trichinella complex. Nat Commun, 2016;7():10513
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Assembly Statistics
| Assembly | T1_ISS3_r1.0, GCA_001447595.1 |
| Strain | ISS3 |
| Database Version | WBPS18 |
| Genome Size | 50,025,957 |
| Data Source | University of Melbourne |
| Annotation Version | 2016-05-WormBase |
Gene counts
| Coding genes | 14,737 |
| Gene transcripts | 19,244 |
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