Oscheius tipulae
BioProject PRJNA644888 | Data Source Wellcome Sanger Institute | Taxonomy ID 141969
About Oscheius tipulae
Oscheius tipulae is a free-living androdioecious species of nematode, characterized by the coexistence of males and hermaphrodites. It is used as a satellite developmental genetic model organism to study vulva formation.
There is 1 alternative genome project for Oscheius tipulae available in WormBase ParaSite: PRJEB15512
Genome Assembly & Annotation
Assembly
The chromosome-scale assembly presented here was generated from Oxford Nanopore and Illumina reads, as described in full by Gonzalez de la Rosa et al., 2021.
Annotation
The gene set was generated with GeneMark-ES, as described by Gonzalez de la Rosa et al., 2021.
Downloads
Tools
Key Publications
- Gonzalez de la Rosa PM, Thomson M, Trivedi U, Tracey A, Tandonnet S, Blaxter M. A telomere-to-telomere assembly of Oscheius tipulae and the evolution of rhabditid nematode chromosomes. G3 (Bethesda), 2021;11(1):jkaa020
Navigation
Assembly Statistics
| Assembly | ASM1342590v1, GCA_013425905.1 |
| Strain | CEW1 |
| Database Version | WBPS18 |
| Genome Size | 60,923,166 |
| Data Source | Wellcome Sanger Institute |
| Annotation Version | 2021-03-WormBase |
Gene counts
| Coding genes | 16,356 |
| Non coding genes | 568 |
| Small non coding genes | 568 |
| Gene transcripts | 16,924 |
Learn more about this widget in our help section
This widget has been derived from the assembly-stats code developed by the Lepbase project at the University of Edinburgh
