Mesorhabditis belari

Genome Assembly & Annotation

Assembly

Illumina short- and Oxfornd Nanopore long-read sequencing data were used to construct a hybrid assembly of the genome using Sparse Assembler as described in Grosmaire et al (2019) supplementary materials.

Annotation

As described in Grosmaire et al (2019) supplementary materials, BRAKER was used to perform gene annotation.

Downloads

• Genomic Sequence (FASTA)
• Hard-masked Genomic Sequence (FASTA)
• Soft-masked Genomic Sequence (FASTA)
• Annotations (GFF3)
• Proteins (FASTA)
• Full-length transcripts (FASTA)
• CDS transcripts (FASTA)

Tools

• Search for sequences in the genome and proteome using BLAST
• Work with lists of data using the WormBase ParaSite BioMart data-mining tool
• Programatically access WormBase ParaSite data using the REST API
• Predict the effects of variants using the Variant Effect Predictor

Key Publications

• Grosmaire M, Launay C, Siegwald M, Brugière T, Estrada-Virrueta L, Berger D, Burny C, Modolo L, Blaxter M, Meister P, Félix MA, Gouyon PH, Delattre M. Males as somatic investment in a parthenogenetic nematode. Science, 2019;363(6432):1210-1213

Navigation

Genome Browser (JBrowse)

Genome Browser (Ensembl)

Example gene page

Example gene tree