Meloidogyne graminicola

Genome Assembly & Annotation

Assembly

The genome was sequenced at Indian Agricultural Research Institute, as described by Somvanshi et al (2018)

Annotation

The annotation was submitted to WormBase by Dr Vishal Somvanshi in September 2018.

Downloads

• Genomic Sequence (FASTA)
• Hard-masked Genomic Sequence (FASTA)
• Soft-masked Genomic Sequence (FASTA)
• Annotations (GFF3)
• Proteins (FASTA)
• Full-length transcripts (FASTA)
• CDS transcripts (FASTA)

Tools

• Search for sequences in the genome and proteome using BLAST
• Work with lists of data using the WormBase ParaSite BioMart data-mining tool
• Programatically access WormBase ParaSite data using the REST API
• Predict the effects of variants using the Variant Effect Predictor

Key Publications

• Somvanshi VS, Tathode M, Shukla RN, Rao U. Nematode Genome Announcement: A Draft Genome for Rice Root-Knot Nematode, <i>Meloidogyne graminicola</i>. J Nematol, 2018;50(2):111-116

Navigation

Genome Browser (JBrowse)

Genome Browser (Ensembl)

Example gene page

Example gene tree

Gene Expression