Ditylenchus destructor

Genome Assembly & Annotation

Assembly

The genome assembly was produced at the State Key Laboratory of Agricultural Microbiology at Huazhong Agricultural University, as described by Zheng et al (2016).

Annotation

The genome annotation was produced at the State Key Laboratory of Agricultural Microbiology at Huazhong Agricultural University, as described by Zheng et al (2016).

Downloads

• Genomic Sequence (FASTA)
• Hard-masked Genomic Sequence (FASTA)
• Soft-masked Genomic Sequence (FASTA)
• Annotations (GFF3)
• Proteins (FASTA)
• Full-length transcripts (FASTA)
• CDS transcripts (FASTA)

Tools

• Search for sequences in the genome and proteome using BLAST
• Work with lists of data using the WormBase ParaSite BioMart data-mining tool
• Programatically access WormBase ParaSite data using the REST API
• Predict the effects of variants using the Variant Effect Predictor

Key Publications

• Zheng J, Peng D, Chen L, Liu H, Chen F, Xu M, Ju S, Ruan L, Sun M. The Ditylenchus destructor genome provides new insights into the evolution of plant parasitic nematodes. Proc Biol Sci, 2016;283(1835):20160942

Navigation

Genome Browser (JBrowse)

Genome Browser (Ensembl)

Example gene page

Example gene tree

Gene Expression