Ascaris suum

Genome Assembly & Annotation

Assembly

The A. suum genome was sequenced by the Gasser laboratory at the University of Melbourne, as described by Jex et al (2011). The version of the genome represented here is that submitted directly to WormBase in 2011, which is similar to, but not exactly the same as, NCBI assembly GCA_000298755.1.

Annotation

The gene predictions were made by the Gasser laboratory at the University of Melbourne, as described by Jex et al (2011). The gene set represented here is that submitted directly to WormBase in 2011.

Downloads

• Genomic Sequence (FASTA)
• Hard-masked Genomic Sequence (FASTA)
• Soft-masked Genomic Sequence (FASTA)
• Annotations (GFF3)
• Proteins (FASTA)
• Full-length transcripts (FASTA)
• CDS transcripts (FASTA)

Tools

• Search for sequences in the genome and proteome using BLAST
• Work with lists of data using the WormBase ParaSite BioMart data-mining tool
• Programatically access WormBase ParaSite data using the REST API
• Predict the effects of variants using the Variant Effect Predictor

Key Publications

• Jex AR, Liu S, Li B, Young ND, Hall RS, Li Y, Yang L, Zeng N, Xu X, Xiong Z, Chen F, Wu X, Zhang G, Fang X, Kang Y, Anderson GA, Harris TW, Campbell BE, Vlaminck J, Wang T, Cantacessi C, Schwarz EM, Ranganathan S, Geldhof P, Nejsum P, Sternberg PW, Yang H, Wang J, Wang J, Gasser RB. Ascaris suum draft genome. Nature, 2011;479(7374):529-533

Navigation

Genome Browser (JBrowse)

Genome Browser (Ensembl)

Example gene page

Example gene tree

Gene Expression